Vijini Mallawaarachchi · @vijinim
30 followers · 16 posts · Server genomic.social
@griggo_grig from presenting Phynteny at APG Awards Fest. 🧬🦠🔬🌟 You can predict the functions of unknown phage genes using an LSTM model trained with phage synteny.
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Check out Phynteny at https://github.com/susiegriggo/Phynteny
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#phages #bacteriophages #synteny #APGAwardsFest2023
#Phages #bacteriophages #synteny #apgawardsfest2023
TU München · @tu_muenchen
308 followers · 199 posts · Server wisskomm.socialCheck out the new episode of our "NewIn" series with Li Deng, Professor of the Prevention of #Microbial #InfectiousDiseases. Her research focuses on #phages, the natural enemies of bacteria: http://go.tum.de/902588
#microbial #infectiousdiseases #phages #bacteriophages #antibioticresistance
CellBioNews · @cellbionews
58 followers · 1416 posts · Server scientificnetwork.deMarine #viruses: Submerged players of #climatechange.
#oceans #microbiome #bacteriophages
https://phys.org/news/2023-06-marine-viruses-submerged-players-climate.html
#viruses #climatechange #oceans #microbiome #bacteriophages
CellBioNews · @cellbionews
50 followers · 1190 posts · Server scientificnetwork.deThousands of unknown #viruses discovered in baby #poo – why this is not necessarily a bad thing.
#viruses #poo #microbiome #bacteriophages #virome
ScienceAlert · @ScienceAlert
277 followers · 120 posts · Server universeodon.com
9-15 April 2023: This week in science we fought antibiotic resistance and observed a shapeshifting galaxy!🐘🍄🔭🧊💊💧
#TWIS
Elephants https://www.sciencealert.com/wild-elephants-appear-to-have-been-domesticated-but-not-by-humans
Silver leaf https://www.sciencealert.com/plant-fungus-infects-human-in-first-reported-case-of-its-kind
Galaxy https://www.sciencealert.com/astronomers-just-found-a-radio-galaxy-that-turned-into-a-blazar
Ice Ic. https://www.sciencealert.com/disputed-variant-of-ice-could-exist-in-nature-after-all-according-to-a-new-experiment
Greenland https://www.sciencealert.com/the-greenland-ice-sheet-is-getting-close-to-a-melting-point-of-no-return
Bacteriophage https://www.sciencealert.com/scientists-find-antibiotic-free-way-to-treat-drug-resistant-infections
#elephants #fungi #pathogen #space #galaxies #CubicIce #bacteria #AntibioticResistance #GoldenStaph #bacteriophages #ClimateChange #science #ScienceAlert #STEM
#twis #elephants #fungi #pathogen #Space #galaxies #cubicice #bacteria #antibioticresistance #goldenstaph #bacteriophages #ClimateChange #Science #sciencealert #stem
Vijini Mallawaarachchi · @vijinim
26 followers · 13 posts · Server genomic.social
The preprint of Phables is up on biorxiv! Phables can resolve high-quality bacteriophage genomes in metagenomic data using assembly graphs.
Preprint: https://www.biorxiv.org/content/10.1101/2023.04.04.535632v1
GitHub: https://github.com/Vini2/phables
@BeardyMcJohnFace @npbhavya @griggo_grig @GB13Faithless @AbbeyHutton @linsalrob
#bacteriophages #phages #metagenomics #bioinformatics #software
#bacteriophages #Phages #metagenomics #bioinformatics #software
Sean Gibbons · @gibbological
209 followers · 412 posts · Server mstdn.scienceRT @Naama_GZ
🦠Excited to share our new #preprint studying bacterial #DNAinversions in inflammatory bowel diseases #IBD, in patients and mice, with implications on the host #immunesystem. #microbiome #inflammation #bacteriophages 🧵1/8 https://biorxiv.org/cgi/content/short/2023.03.31.535104v1
#preprint #dnainversions #IBD #immunesystem #microbiome #inflammation #bacteriophages
Akos T Kovacs · @EvolvedBiofilm
432 followers · 1600 posts · Server mstdn.scienceRT @iLivius
Our new paper about the #stress effect of #water and #phosphorus limitation on #potato growth and #root-associated #microbiome is out! We used 16S and ITS #metabarcoding, shotgun #metagenomics looking for #bacteria, #fungi, #plasmids and #bacteriophages. https://rdcu.be/c7MHb
#stress #water #phosphorus #potato #root #microbiome #Metabarcoding #Metagenomics #bacteria #fungi #plasmids #bacteriophages
CellBioNews · @cellbionews
36 followers · 796 posts · Server scientificnetwork.deResearch team proves #bacteria-killing #viruses deploy #genetic code-switching to deceive hosts.
#bacteriophages #evolution #arms_race
https://phys.org/news/2023-03-team-bacteria-killing-viruses-deploy-genetic.html
#bacteria #viruses #genetic #bacteriophages #evolution #arms_race
Vivek Mutalik · @vivek_mutalik
661 followers · 827 posts · Server fediscience.org#Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut #microbiota: iScience
Vivek Mutalik · @vivek_mutalik
661 followers · 826 posts · Server fediscience.orgRole of #Bacteriophages in the #Evolution of Pathogenic #Vibrios and Lessons for #Phage Therapy
https://link.springer.com/chapter/10.1007/978-3-031-22997-8_8
#phage #vibrios #evolution #bacteriophages
Vivek Mutalik · @vivek_mutalik
659 followers · 803 posts · Server fediscience.orgGenetic #engineering of #bacteriophages: Key concepts, strategies, and applications - #phage
https://www.sciencedirect.com/science/article/abs/pii/S073497502300023X
#phage #bacteriophages #engineering
Vivek Mutalik · @vivek_mutalik
649 followers · 770 posts · Server fediscience.org#Bacteriophages inhibit and evade cGAS-like immune function in bacteria: Cell
#phage #antiphage #signaling
https://www.cell.com/cell/fulltext/S0092-8674(22)01584-7
#signaling #antiphage #phage #bacteriophages
Andrzej Grzyb · @GrzybAndrzej
0 followers · 884 posts · Server respublicae.eu
RT @PhageEU: How to realize #bacteriophages potential in the 🇪🇺? Tune in or join us in the @europarl_en in Brussels for the seminar with MEPs @e_fragkos and @JarubasAdam More info: https://phageurope.eu/2023/01/10/how-to-realize-bacteriophages-potential-in-the-eu/
🐦🔗: https://n.respublicae.eu/GrzybAndrzej/status/1621985807169978369
Vijini Mallawaarachchi · @vijinim
22 followers · 7 posts · Server genomic.socialStarting off 2023 by learning Snakemake and made one of my tools into a full pipeline using Snaketool, the Cookiecutter profile for making a Snakemake-based bioinformatics tool. 🐍😀
If you want to resolve phage genomes from viral metagenomic samples, go check out my new tool Phables on bioconda! 😃
Phables: https://anaconda.org/bioconda/phables
Snaketool: https://github.com/beardymcjohnface/Snaketool
#bioinformatics #software #bacteriophages #Phages
Vijini Mallawaarachchi · @vijinim
22 followers · 7 posts · Server genomic.social
Starting off 2023 by learning Snakemake and made one of my tools into a full pipeline using Snaketool, the Cookiecutter profile for making a Snakemake-based bioinformatics tool. 🐍😀
If you want to resolve phage genomes from viral metagenomic samples, go check out my new tool Phables on bioconda! 😃
Phables: https://anaconda.org/bioconda/phables
Snaketool: https://github.com/beardymcjohnface/Snaketool
#bioinformatics #software #bacteriophages #Phages
Vivek Mutalik · @vivek_mutalik
623 followers · 586 posts · Server fediscience.orgA Flexible and Efficient #Microfluidics #Platform for the Characterization and Isolation of Novel #Bacteriophages | Applied and Environmental Microbiology
#phage #phages #highthroughput
https://journals.asm.org/doi/10.1128/aem.01596-22
#highthroughput #Phages #phage #bacteriophages #platform #microfluidics
Vivek Mutalik · @vivek_mutalik
573 followers · 473 posts · Server fediscience.org
Genomic diversity and comprehensive #taxonomical classification of 61 #Bacillus subtilis group member infecting #bacteriophages, and the identification of ortholog taxonomic signature genes |
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-09055-w
#Phages #phage #bacteriophages #Bacillus #taxonomical
Vivek Mutalik · @vivek_mutalik
468 followers · 349 posts · Server fediscience.org#Ecological and #functional roles of #bacteriophages in contrasting environments: marine, terrestrial and human #gut -
#gut #bacteriophages #functional #ecological
Vivek Mutalik · @vivek_mutalik
468 followers · 347 posts · Server fediscience.orgRecent Advances in the Application of #Bacteriophages against Common #Foodborne #Pathogens -
#pathogens #foodborne #bacteriophages