Anybody working with MaxDIA on semispecific searches? Importing a FragPipe-generated library.tsv does not seem to work beyond the "Peptide FDR1" step. The discovery libraries publicly available only feature specific, trypsin digestions and nothing semi-specific. #MaxQuant #MaxDIA (things you ought to not do at all... semi-specific with MaxDIA).

Trying to benchmark DIA data with MaxQuant is still very unsatisfying - at least for semi-specific data without a big discovery library, I am still waiting for the first successful run. #DIA #MaxDIA