~40% of XBB.1.16 & 29% of XBB.2.3* sequences submitted from USA were identified by Airport Surveillance [@ 7 international airports (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)]

Dashboard without airport sequences

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RT @RajlabN
#COVID19 #VariantDashboard - #USA
[without "Airport Surveillance" sequences]

Top lineages (#15DayTrends):

XBB.1.5 (62.5%)
XBB.1.16 (3.4%)
XBB.1.9.1 (3.4%)
XBB.1.5.1 (2.6%)
…
https://twitter.com/RajlabN/status/1654324802763587584

Overall trends consistent with #VariantDashboard #15DayTrends - #USA

---
RT @RajlabN
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

54.5% XBB.1.5
5.8% XBB.1.16
5.2% XBB.1.9.1
2.6% XBB.1.16.1
2.5% XBB.1.5.1
2.2% XBB.2.3
2.1% XBB.1.9.2
1.7% EG.1

#SARSCoV2 Tracker: http://tinyurl.com/mryj4uu7 Updated: 05/04/23

1/n
https://twitter.com/RajlabN/status/1654323743223607297

USA Airport surveillance update #15DayTrends

149 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia) from @CDCgov's Traveler-Based Genomic Surveillance Program.

*Includes pooled swabs & Many bad QC seqs

15/n

Status of the latest #COVID19 Wave in #Texas

XBB.1.5 is still the top circulating lineage in TX (#15DayTrends)

14/n

Status of the latest #COVID19 Wave in #California

XBB.1.5 is still the top circulating lineage in CA (#15DayTrends) includes airport surveillance sequences

13/n

Airport sequences constitute ~19.5% of sequences with sample collection dates in the last 15 days (#15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n

#COVID19 #VariantDashboard - #USA
[without "Airport Surveillance" sequences]

Top lineages (#15DayTrends):

XBB.1.5 (62.5%)
XBB.1.16 (3.4%)
XBB.1.9.1 (3.4%)
XBB.1.5.1 (2.6%)
XBB.1.5.13 (1.6%)
XBB.2.3 (1.5%)
FL.2 (1.3%)
EG.1 (1.1%)
FU.1 (1.1%)
XBB.1.16.1 (1.1%)

2/n

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

54.5% XBB.1.5
5.8% XBB.1.16
5.2% XBB.1.9.1
2.6% XBB.1.16.1
2.5% XBB.1.5.1
2.2% XBB.2.3
2.1% XBB.1.9.2
1.7% EG.1

#SARSCoV2 Tracker: http://tinyurl.com/mryj4uu7 Updated: 05/04/23

1/n

USA Airport surveillance update #15DayTrends

193 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia) from @CDCgov's Traveler-Based Genomic Surveillance Program.

*Includes pooled swabs & Many bad QC seqs

15/n

Status of the latest #COVID19 Wave in #Texas

XBB.1.5 is still the top circulating lineage in TX (#15DayTrends)

14/n

Status of the latest #COVID19 Wave in #California

XBB.1.5 is still the top circulating lineage in CA (#15DayTrends)

includes airport surveillance sequences

13/n

Airport sequences constitute ~19% of sequences with sample collection dates in the last 15 days (#15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n

#COVID19 #VariantDashboard - #USA
[without "Airport Surveillance" sequences]

Top lineages (#15DayTrends):
XBB.1.5 (65.3%)
XBB.1.9.1 (3.2%)
XBB.1.16 (2.4%)
XBB.1.5.1 (2.2%)
XBB.1.5.13 (1.5%)
XBB.1.5.17 (1.5%)
XBB.1.5.15 (1.2%)
XBB.1.9.2 (1.2%)
FL.2 (1.1%)
XBB.2.3 (1%)

2/n

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

56.6% XBB.1.5
5.1% XBB.1.16
5.0% XBB.1.9.1
2.4% XBB.1.16.1
2.1% XBB.1.5.1
1.9% XBB.1.9.2
1.6% XBB.2.3
1.4% EG.1

#SARSCoV2 Tracker: http://tinyurl.com/mryj4uu7 Updated: 05/03/23

1/n

USA Airport surveillance update #15DayTrends

249 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia) from @CDCgov's Traveler-Based Genomic Surveillance Program.

*Includes pooled swabs & Many bad QC seqs

15/n

Status of the latest #COVID19 Wave in #California

XBB.1.5 is still the top circulating lineage in CA (#15DayTrends)

includes airport surveillance sequences

14/n

Airport sequences constitute ~17% of sequences with sample collection dates in the last 15 days (#15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n

#COVID19 #VariantDashboard - #USA
[without sequences from "Airport Surveillance"]

Top lineages (#15DayTrends):

XBB.1.5 (64.3%)
XBB.1.9.1 (3.9%)
XBB.1.5.1 (2.5%)
XBB.1.16 (2.2%)
XBB.1.9.2 (1.5%)
XBB.1.5.13 (1.4%)
XBB.1.5.17 (1.3%)
XBB.1.5.15 (1.3%)
FL.2 (1.2%)

2/n

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

56.4% XBB.1.5
5.4% XBB.1.9.1
4.8% XBB.1.16
2.3% XBB.1.5.1
2.3% XBB.1.9.2
1.9% XBB.1.16.1
1.6% XBB.2.3
1.3% EG.1

#SARSCoV2 Tracker: http://tinyurl.com/mryj4uu7 Updated: 05/02/23

1/n

USA Airport surveillance update #15DayTrends

118 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia) from @CDCgov's Traveler-Based Genomic Surveillance Program.

*Includes pooled swabs & Many bad QC seqs

15/n