CellBioNews · @cellbionews
89 followers · 1693 posts · Server scientificnetwork.deNew resource harmonizes #16S and #shotgun #sequencing data for #microbiome research.
https://phys.org/news/2023-07-resource-harmonizes-16s-shotgun-sequencing.html
#16s #shotgun #sequencing #microbiome #greengenes2 #Metagenomics
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
119 followers · 471 posts · Server ecoevo.socialVertU: universal multilocus primer sets for eDNA metabarcoding of vertebrate diversity, evaluated by both artificial and natural cases
https://www.frontiersin.org/articles/10.3389/fevo.2023.1164206/full
#metabarcoding #vertebrate #primers #universal #16S #12S #COI
#Metabarcoding #Vertebrate #primers #universal #16s #12s #coi
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
116 followers · 429 posts · Server ecoevo.socialDoes phylogeny explain bias in quantitative DNA metabarcoding?
https://mbmg.pensoft.net/article/101266/
#metabarcoding #phylogeny #quantification #16S #COI
#Metabarcoding #Phylogeny #quantification #16s #coi
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
114 followers · 411 posts · Server ecoevo.social
"**Accounting for 16S rRNA copy number prediction uncertainty and its implications in bacterial diversity analyses"**
#16S #metabarcoding #MarkerGeneSequencing #CopyNumber #Diversity #MicrobialDiversity #Bacteria
https://www.nature.com/articles/s43705-023-00266-0
#16s #Metabarcoding #markergenesequencing #copynumber #diversity #microbialdiversity #bacteria
IMPACTT Microbiome · @IMPACTT
75 followers · 30 posts · Server mstdn.science
Today is the LAST DAY to apply for our joint CBW-IMPACTT Microbiome Analysis Workshop at the early-bird rate! July 5-7, 2023 at the University of Calgary. Apply here: https://bioinformatics.ca/workshops-all/2023-cbw-impactt-microbiome-analysis/
#bioinformatics #workshop #16S #18S #sequencing #shotgunsequencing #metagenomics #genomics #transcriptomics #metatranscriptomics #longread #markergene #functionalannotation #tutorial #statistics #biostatistics #microbiome #microbiota #microbialecology #diversity #betadiversity #differentialabundance
#bioinformatics #workshop #16s #18S #sequencing #shotgunsequencing #Metagenomics #genomics #Transcriptomics #metatranscriptomics #longread #markergene #functionalannotation #Tutorial #statistics #biostatistics #microbiome #microbiota #microbialecology #diversity #betadiversity #differentialabundance
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
98 followers · 337 posts · Server ecoevo.social
"A comparison between Greengenes, SILVA, RDP, and NCBI reference databases in four published microbiota datasets"
https://www.biorxiv.org/content/10.1101/2023.04.12.535864v1
#16S #metabarcoding #MarkerGeneSequencing #SequenceDatabase #db #Greengenes #SILVA #RDP #NCBI #microbiome
#16s #Metabarcoding #markergenesequencing #sequencedatabase #db #greengenes #silva #rdp #NCBI #microbiome
Jessica Rieder · @jess_rieder
111 followers · 179 posts · Server ecoevo.social1) #Shortread data is adequate for exploring the spatio-temporal dynamics and community composition at higher taxonomic levels (Fig 1), but not at lower levels as primer biases start to emerge (Fig 4)
Based off finding 1, it should be possible to combine #16S rRNA data even when different 16S rRNA primers were used when exploring #spatio-temporal patterns.
Jessica Rieder · @jess_rieder
111 followers · 177 posts · Server ecoevo.social🚨 New Paper 🚨 #Metagenomics and metabarcoding experimental choices and their impact on #microbial #community characterization in #freshwater recirculating #aquaculture systems
Open access link to paper in Environmental Microbiomes:
https://rdcu.be/c5D08
#aquacultureeurope #16s #16smetabarcoding #fish health #16sRrnaSequencing #RAS #microbiomes #bacteria
See thread 🧵 for findings....
#Metagenomics #microbial #community #Freshwater #aquaculture #aquacultureeurope #16s #16smetabarcoding #fish #16srrnasequencing #RAS #microbiomes #bacteria
