Jessica Rieder · @jess_rieder
111 followers · 181 posts · Server ecoevo.social

Please repeat:
Me: 16S rRNA sequencing (repeat)
Me: is NOT (repeat)
Me: metagenomics (repeat)
Me: 16S rRNA is NOT metagenomics! (repeat until understood).
I need metagenomics recirculating aquaculture papers, not 16S rRNA called metagenomics. Hope is fading!

#academicchatter #16smetabarcoding #Metagenomics #sequencing #phdlife

Last updated 2 years ago

Jessica Rieder · @jess_rieder
111 followers · 177 posts · Server ecoevo.social

๐Ÿšจ New Paper ๐Ÿšจ and metabarcoding experimental choices and their impact on characterization in recirculating systems

Open access link to paper in Environmental Microbiomes:
rdcu.be/c5D08

health

See thread ๐Ÿงต for findings....

#Metagenomics #microbial #community #Freshwater #aquaculture #aquacultureeurope #16s #16smetabarcoding #fish #16srrnasequencing #RAS #microbiomes #bacteria

Last updated 2 years ago

Anyone ever use emu for 16s metabarcoding using reads. I've had great results for small bacterial communities but when the fastq file gets to be more than 1gb it takes days to run. Any suggestions on how to speed up the process?

#microbialcommunities #16smetabarcoding #bioinformatics #microbiology #nanopore

Last updated 2 years ago