Jessica Rieder · @jess_rieder
111 followers · 181 posts · Server ecoevo.socialPlease repeat:
Me: 16S rRNA sequencing (repeat)
Me: is NOT (repeat)
Me: metagenomics (repeat)
Me: 16S rRNA is NOT metagenomics! (repeat until understood).
I need metagenomics recirculating aquaculture papers, not 16S rRNA called metagenomics. Hope is fading!
#academicchatter #16smetabarcoding #Metagenomics #sequencing #phdlife
#academicchatter #16smetabarcoding #Metagenomics #sequencing #phdlife
Jessica Rieder · @jess_rieder
111 followers · 177 posts · Server ecoevo.social🚨 New Paper 🚨 #Metagenomics and metabarcoding experimental choices and their impact on #microbial #community characterization in #freshwater recirculating #aquaculture systems
Open access link to paper in Environmental Microbiomes:
https://rdcu.be/c5D08
#aquacultureeurope #16s #16smetabarcoding #fish health #16sRrnaSequencing #RAS #microbiomes #bacteria
See thread 🧵 for findings....
#Metagenomics #microbial #community #Freshwater #aquaculture #aquacultureeurope #16s #16smetabarcoding #fish #16srrnasequencing #RAS #microbiomes #bacteria
Haley Sanderson :verified: · @Haley_Sanderson_092018
100 followers · 155 posts · Server social.linux.pizzaAnyone ever use emu for 16s metabarcoding using #nanopore reads. I've had great results for small bacterial communities but when the fastq file gets to be more than 1gb it takes days to run. Any suggestions on how to speed up the process? #microbiology #bioinformatics #16Smetabarcoding #nanopore #microbialcommunities
#microbialcommunities #16smetabarcoding #bioinformatics #microbiology #nanopore