Kevin Karhan :verified: · @kkarhan
627 followers · 24928 posts · Server mstdn.social

@kubikpixel at least something that can compete with ...

noice...
youtube.com/watch?v=qg6Iamnlfx

#3DViewer

Last updated 2 years ago

frykitty · @frykitty
35 followers · 152 posts · Server artisan.chat

I lurve vintage and antique 3D viewers. I find looking through them transporting. Even though it isn't 3D, I still want a magic lantern eventually. Also, I need more .

#diableries #3DViewer #viewmaster #stereoviewer

Last updated 2 years ago

Albert Cardona · @albertcardona
697 followers · 557 posts · Server qoto.org

Now onto : Fiji is a recursive acronym meaning "Fiji is just ImageJ" fji.sc (and the paper nature.com/articles/nmeth.2019 ) –and is a open source software for image processing imagej.nih.gov/ij/index.html written by Wayne Rasband from the Research Branch.

An analogy: think of ImageJ as the kernel and Fiji as the rest of the operating system.

brings to :
(1) a package manager to install and update plugins, and that crucially enables reproducible science by exporting the whole set of plugins and libraries as an executable;
(2) a Script Editor imagej.net/scripting/script-ed supporting many languages (, and more), all with access to a huge collection of libraries;
(3) huge amount of libraries such as , for plotting, for GUIs, etc.

There are many, many plugins. A tiny sample:

Machine learning-based image segmentation:
- imagej.net/plugins/labkit/
- Trainable Segmentation imagej.net/plugins/tws/index

3D/4D/ND Visualization:
- 3D/4D Viewer imagej.net/plugins/3d-viewer/i with ray-tracing, orthoslices, volume rendering, and more
- imagej.net/plugins/bdv/index for interactively navigate N-dimensional image volumes larger than RAM

Image registration and serial section alignment:
- for registering 3D/4D tiled datasets, with multiview deconvolution and more imagej.net/plugins/bigstitcher
- for montaging in 2D and alinging in 3D collections of serial sections, typically from (volume electron microscopy) syn.mrc-lmb.cam.ac.uk/acardona
- libraries for extracting and features, then finding feature correspondences and estimating rigid and elastic transformation models nature.com/articles/nmeth.2072

Summarizing is impossible. See the online forum where questions find answers by the hand of the broader community of users and developers forum.image.sc/

#java #nih #python #groovy #ruby #BigDataViewer #BigStitcher #TrakEM2 #sift #FijiSc #imagej #scala #clojure #jvm #ImgLib2 #JFreeChart #LabKit #weka #3DViewer #bdv #vem #mpicbg #mops

Last updated 2 years ago