RT @MariekeOudelaar
📣 Excited to share our latest work, in which we set out to reconstitute #3Dgenome folding in vitro to get more insight into the underlying mechanisms. Summary of our surprising findings below! 1/7

https://www.biorxiv.org/content/10.1101/2023.02.27.530214v1

RT @MariekeOudelaar
📣 Excited to share our latest work, in which we set out to reconstitute #3Dgenome folding in vitro to get more insight into the underlying mechanisms. Summary of our surprising findings below! 1/7

https://www.biorxiv.org/content/10.1101/2023.02.27.530214v1

1st weekly digest of #GeneRegulation papers:

🧬#TranscriptionFactor atlas of differentiation https://www.sciencedirect.com/science/article/pii/S0092867422014702

🧬 #TFbinding directed heterochromatin (#ZFP462) https://www.nature.com/articles/s41556-022-01051-2

🧬#3Dgenome organisation of nuclear speckles & splicing https://www.biorxiv.org/content/10.1101/2023.01.04.522632v1

🧬 Nuclear partitioning by charge blocks (#MED1, #PolII) https://www.sciencedirect.com/science/article/pii/S0092867422015264

🧬 Transient loss of #Polycomb induces an #epigenetic cancer fate https://www.biorxiv.org/content/10.1101/2023.01.04.522799v1

🧬 RGT: a toolbox for NGS analysis https://www.biorxiv.org/content/10.1101/2022.12.31.522372v1

METALoci: a new tool to identify 3D regulatory regions in the genome, sex-determination edition.

📜 https://prelights.biologists.com/highlights/sex-determining-3d-regulatory-hubs-revealed-by-genome-spatial-auto-correlation-analysis/

Martín Estermann #NIEHS highlights an amazing #preprint from Irene Mota-Gómez, Juan Antonio Rodríguez and colleagues #CapelLab # Marti-RenomLab #LupiáñezLab.

#3Dgenome # METALoci

RT @jrotwitguez@twitter.com

How is sex determined? How is it encoded in the #3Dgenome?
🥳Happy to share my main postdoc work! "Sex-determining 3D regulatory hubs identified with METALoci, a new genome spatial auto-correlation approach"

W/ Capel Lab, @mamartirenom@twitter.com & @Dariloops@twitter.com
🧵👇: https://www.biorxiv.org/content/10.1101/2022.11.18.516861v1

🐦🔗: https://twitter.com/jrotwitguez/status/1594642846212100098

RT @IreneMota@twitter.com

How is sex determined? How is it encoded in the #3Dgenome?
Happy to share my PhD work. Sex-determining 3D regulatory hubs identified w METALoci, a new genome spatial auto-correlation approach

With @jrotwitguez@twitter.com Capel Lab @mamartirenom@twitter.com @Dariloops@twitter.com

Thread 👇https://biorxiv.org/cgi/content/short/2022.11.18.516861v1

🐦🔗: https://twitter.com/IreneMota/status/1594630102305865729

RT @Dariloops@twitter.com

🚨How is sex determined? How is it encoded in the #3Dgenome?

👀Find out in our new work led by @IreneMota@twitter.com & @jrotwitguez@twitter.com in a fantastic collab w/ Capel lab & @mamartirenom@twitter.com

🆕Introducing METALoci, a new approach to analyze and compare Hi-C data

https://biorxiv.org/cgi/content/short/2022.11.18.516861v1 (1/4)

🐦🔗: https://twitter.com/Dariloops/status/1594659622111285248

RT @Remeseiro_Lab@twitter.com

1/Pre-print 📢! Rewiring of the #enhancer landscape and #3Dgenome in #glioblastoma orchestrates gene expression changes underlying neuron-to-glioma synapse communication. Major actors involved: #SMAD3 #PITX1 regulatory networks. Read tweetorial⬇️ https://www.biorxiv.org/content/10.1101/2022.11.16.516797v2

🐦🔗: https://twitter.com/Remeseiro_Lab/status/1593731265446006784

This CTCF paper bot is set to be mirrored on Twitter (https://twitter.com/CTCF_Papers) and Mastodon (@CTCF_papers). #CTCF #TFbinding #chromatin #3Dgenome

#introduction I am Carlos Rojas a faculty at San José State University #academia. I am interested in computational methods to understand biological mechanisms #bioinformatics #3dgenome #metagenomics. I have recently been gaining interest in #masterygrading #flippedclassrooms and general #csedu. I will probably also write about #filmohotography #typewriters #fountainpens #aviation #running. I am looking forward to being more engaged with folks on here. I used the Bird app mostly to find papers.

RT @giacomo_cavalli@twitter.com

#3Dgenome modelling, top-down and bottom-up approaches here: https://authors.elsevier.com/sd/article/S0959440X22001725

🐦🔗: https://twitter.com/giacomo_cavalli/status/1588440096637943808