RT @AkisPapantonis
Few hours ago our preprint using #MicroC to study the contribution of RNAPII in #3Dgenome folding came out, all peer-reviewed and formatted in @NatureGenet. Amazing effort by @NUbelmesser and Shu Zhang (now a Dr!), and simulation wizard @dr_barbieri_mar

https://www.nature.com/articles/s41588-023-01364-4

A new variation of the #HiC method to study #3Dgenome interactions specifically for open #chromatin. "HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization" https://www.cell.com/molecular-cell/fulltext/S1097-2765(22)00098-3?

Using #3Dgenome interaction
data from #neuron cells differentiated from iPSCs to infer associations that might be linked with #Autism in what the authors define as "3D GWAS". Read: Interaction-integrated linear mixed model reveals 3D-genetic basis underlying Autism https://www.sciencedirect.com/science/article/pii/S0888754323000198

Anchoring #3Dgenome & #chromatin contacts to #cellnucleus landmarks: Mapping #nucleolus-associated chromatin interactions using nucleolus #HiC reveals pattern of #heterochromatin interactions.
@NatureComms https://doi.org/10.1038/s41467-023-36021-1

I am presenting this poster at #neurips2022 at the #mlsb workshop. If you are here, you are probably already interested in #MachineLearning. If you are also interested in #PolymerPhysics and #chromosome #structures, come check it out. #3dgenome #deeplearning

RT @IreneMota
How is sex determined? How is it encoded in the #3Dgenome?
Happy to share my PhD work. Sex-determining 3D regulatory hubs identified w METALoci, a new genome spatial auto-correlation approach

With @jrotwitguez Capel Lab @mamartirenom @Dariloops

Thread 👇https://biorxiv.org/cgi/content/short/2022.11.18.516861v1

Hello everyone! I am Atreya, a PhD candidate in UT Austin. I had been lurking here for some time, and finally decided to write about myself. My research is on #3dgenome and #condensin. I am also dabbling in #deeplearning for some time. Apart from research, I like talking about #darkskies #photography and #scicomm.

RT @IreneMota@twitter.com

How is sex determined? How is it encoded in the #3Dgenome?
Happy to share my PhD work. Sex-determining 3D regulatory hubs identified w METALoci, a new genome spatial auto-correlation approach

With @jrotwitguez@twitter.com Capel Lab @mamartirenom@twitter.com @Dariloops@twitter.com

Thread 👇https://biorxiv.org/cgi/content/short/2022.11.18.516861v1

🐦🔗: https://twitter.com/IreneMota/status/1594630102305865729

#introduction I am Carlos Rojas a faculty at San José State University #academia. I am interested in computational methods to understand biological mechanisms #bioinformatics #3dgenome #metagenomics. I have recently been gaining interest in #masterygrading #flippedclassrooms and general #csedu. I will probably also write about #filmohotography #typewriters #fountainpens #aviation #running. I am looking forward to being more engaged with folks on here. I used the Bird app mostly to find papers.