Hoang Anh Le (aka Anh), PhD · @AnhHLe2702
219 followers · 193 posts · Server mstdn.science

I have this silly question about . So is there any advantage to using different software for image segmentation? I see , , and all can do this, but if the underlying algorithm is the same, then why not just stick with ImageJ?

#imagesegmentation #imagej #CellProfiler #napari #python

Last updated 2 years ago

Beth Cimini · @bethcimini
315 followers · 94 posts · Server fediscience.org

Looking to learn more about in 2023? Reminder that every other Friday (including this Friday), the
team hosts
Center for Open Bioimage Analysis (openbioimageanalysis.org) Office Hours! Signups can always be found at broad.io/imagingofficehours

#CellProfiler #BioImageAnalysis

Last updated 2 years ago

ashish(@tp53) · @acgt01
34 followers · 519 posts · Server genomic.social

@bethcimini thanks for putting it out ! I am a newbie bioinformatician with very little biology knowledge , and have been greatly inspired by @DrAnneCarpenter work on and it's impact on drug discovery at Recursion, and wanting to learn about microscopy and imaging. Does this primer assume some biology knowledge as a prereq ?

#CellProfiler

Last updated 2 years ago

Albert Cardona · @albertcardona
946 followers · 4 posts · Server mathstodon.xyz

Have you discovered the image processing forum yet? forum.image.sc

Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software and many more.

#groovy #kotlin #python #java #StarDist #scikitimage #QuPath #napari #ilastik #icy #DeepLabCut #CellProfiler #imagej #FijiSc

Last updated 2 years ago

Anne Carpenter · @DrAnneCarpenter
453 followers · 22 posts · Server fediscience.org

Part 2:
My lab invented the open-source software CellProfiler and the imaging assay Cell Painting and we now focus on using our machine learning and deep learning skills for image-based profiling, to accelerate drug discovery and functional genomics. Our research led to the founding of Recursion, a clinical-stage techbio powered largely by the information in cell images.

#deeplearning #machinelearning #rxrx #techbio #drugdiscovery #CellProfiler #introduction

Last updated 2 years ago

Albert Cardona · @albertcardona
697 followers · 557 posts · Server qoto.org

Have you discovered the image processing forum yet? forum.image.sc

Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software and many more.

#ilastik #StarDist #FijiSc #imagej #napari #QuPath #scikitimage #java #python #kotlin #groovy #CellProfiler #DeepLabCut #icy

Last updated 2 years ago