"Rapid species discovery and identification with real-time barcoding facilitated by ONTbarcoder 2.0 and Oxford Nanopore R10.4"

biorxiv.org/content/10.1101/20

The accompanying video is cool
twitter.com/RudolfMeier15/stat

#DNAbarcoding #nanopore #gui

Last updated 1 year ago

The-14 · @The14
20 followers · 713 posts · Server mastodon.world
Karl Magnacca · @kmagnacca
47 followers · 58 posts · Server ecoevo.social

Has anyone worked with sequences from BOLD and found...anomalies? I've been working with a big batch and just discovered that 1/3 of them have inexplicable deletions in the text sequence, even though the chromatograms show it's unambiguously complete. Seems like a problem...

#DNAbarcoding #dna

Last updated 2 years ago

Donald Hobern · @dhobern
266 followers · 303 posts · Server scicomm.xyz

stangeia.hobern.net/lepidopter

Blog post reviewing the species identified from from a year's sampling in my garden in .

Even though I have spent years photographing and identifying hundreds of moth species in the garden, these DNA barcodes added 23 species I had not previously recorded. Some seem common and are rarely or never recorded on citizen science platforms like

#biodiversity #entomology #inaturalist #canberra #malaise #insects #DNAbarcoding #lepidoptera

Last updated 2 years ago

Donald Hobern · @dhobern
233 followers · 189 posts · Server scicomm.xyz

I've updated the data mirror and browser interface I host for exploring Australian public records from . I wanted an easier way to visualise and break down the relationships between the scientific names provided as identifications and the signals from the barcode BIN clusters.

bold-au.hobern.net/

The images show specimens identified as Dysbatus stenodesma and the two BINS into which those specimens fall.

bold-au.hobern.net/specimens.p

#lepidoptera #entomology #DNAbarcoding #bold #barcode #dna

Last updated 2 years ago

Rob Waterhouse · @rmwaterhouse
194 followers · 17 posts · Server ecoevo.social

The last couple of hours of Europe's kick-off are for joint network activities, the area of BGE where (BIOSCAN Europe) and full sequencing (ERGA) will converge and really break ground. biodiversitygenomics.eu/

#biodiversity #Genomics #DNAbarcoding #genome

Last updated 2 years ago

Rob Waterhouse · @rmwaterhouse
190 followers · 14 posts · Server ecoevo.social

Intense working sessions on Day 2 of the kick-off event at Naturalis ... break-out sessions at work package and stream level, to wrap up the day with a plenary to present and discuss outputs and conclusions from ERGA & BIOSCAN Europe

#biodiversity #Genomics #europe #genome #DNAbarcoding #genomes #datascience

Last updated 2 years ago

Donald Hobern · @dhobern
74 followers · 12 posts · Server scicomm.xyz

Introduction (now with hashtags). I'm a long-term and informatician/#datascientist based in Canberra. My focus is on and open data, local biodiversity monitoring, diversity, (automated) -trapping, species reference lists, , with spillover to the subject of my other work responsibilities, crop data management.

#DNAbarcoding #light #insect #fair #biodiversity #naturalist

Last updated 2 years ago