#GeneOntology Nobody believes, everybody uses

Not only does this MOD issue of #Genetics have the #GeneOntology Consortium’s brand new, super exciting article, but the cover art is FANTASTIC 😉!! Find our new GO paper here: https://doi.org/10.1093/genetics/iyad031 #NewPaper
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RT @GeneticsGSA
A new issue of #GENETICS is out today! It features our 2nd annual collection of Model Organism Database articles from @news4go @ZFINmod @Xenbase @yeastgenome @MaizeGDB @ratgenome. Cozy cover a…
https://twitter.com/GeneticsGSA/status/1654153164935815168

Huge thanks to @DisProt_db for hosting the #GeneOntology consortium meeting and sharing their beautiful city with us! Have a safe trip home from #Padova for everyone leaving today. It’s been an amazing meeting with tons of great formal (and informal) discussions!

After all those years, WHY didn't you tell me about recursive queries in #SPARQL that find all the descendants of a term in an ontology? https://gist.github.com/lindenb/2b0239f2237ce835fe2d2ddfc9ebeb02

#rdf #go #geneontology #bioinformatics

Hey Twitterverse, if you work on Fly, Mouse, Rat, Yeast, Worm, Frog, or Zebrafish and/or the #GeneOntology, and use the Alliance resource- now’s your chance to tell us what you like (or what you don’t!). The #alliance is looking for YOUR input! #UserSurvey
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RT @alliancegenome
Got thoughts on the Alliance? Share them with us by taking the 2023 Alliance User Survey! We've added a question this year especially for our model organism…
https://twitter.com/alliancegenome/status/1650592524585652225

The #GeneOntology is thrilled to be one of the founding Global Core Biodata Resources, a status neatly described by Guy Cochrane in his fantastic #biocuration2024 keynote as indicating a “keystone species” in the ecosystem of biodata resources.
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RT @biocuration2023
Best way to start the end of the conference : Day 4
Our last keynote speaker : Guy Cochrane on Global Biodata Coalition (GBC)
Forum has been formed to overcome the ex…
https://twitter.com/biocuration2023/status/1651121819758239745

Wow! The room is absolutely packed for another amazing talk by a #GeneOntology member: @wormbase’s Kimberly Van Auken presenting on WB’s ACKnowledge pipeline, which uses #AI to aid fact extraction in community curation #biocuration2023

Wonderful speech from Patrick Masson to kick off #biocuration2023 on the #GeneOntology’s GO-CAM Models!

You may know about the #GeneOntology, but do you know about the Disease Ontology? Follow DO on slack!
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RT @diseaseontology
Join our slack group and stay up to date with the Disease Ontology:

https://join.slack.com/t/humandiseaseontology/shared_invite/zt-1sw9fbq8m-V0xQSN67tMkBrmvkJYcK2A

#DiseaseOntologySlack
https://twitter.com/diseaseontology/status/1646960074563244059

BioMart- of course we all know you can get #GeneOntology annotations with this great tool, but here's a fantastic #tweetorial about converting gene IDs!
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RT @ensembl
1/ Do you have a list of @ensembl IDs that you want to convert to IDs from other databases?

Here's how you can retrieve the @NCBI gene IDs from a list of #Ensembl IDs. A thread...🧵

#genomics #bioinformatics #tweetorial #Ensembltraining 🧬
https://twitter.com/ensembl/status/1646497467909767169

Many of the #GeneOntology contributors are #curators, who carefully pull data from literature and make it available on our site- but there are many similar opportunities working with other #ontologies! Here's a fantastic position with EBI working to curate #phenotypes- apply now!
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RT @EMBLEBIjobs
CLOSING: Scientific Curator

Join the PARADIGM initiative, a brand new project in collaboration with @sangerinstitute @Cambridge_Uni @Unio…
https://twitter.com/EMBLEBIjobs/status/1643931562537545728

Just in time for #WisdomWednesday: @ensembl's Variant Effect Predictor now displays #GeneOntology #annotations with links directly to @QuickGO_EBI- making the VEP tool even more fantastic!!

Read this quick blog post to learn more:
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RT @ensembl
Check out our new blogpost here (https://buff.ly/3Ke5GCx ) on the new Gene Ontology function now available in @ensembl VEP.
@news4go #variant #gene #annotator #bioinformatics
https://twitter.com/ensembl/status/1643619058468769792

It's past #AprilFoolsDay so trust us- we have new data! The April 2023 #GeneOntology Release (2023-04-01) is now available!
http://current.geneontology.org/
http://release.geneontology.org/2023-04-01
https://doi.org/10.5281/zenodo.7796232
43,093 GO terms
7,442,411 annotations
1,502,221 gene products
5,291 species

#ThrowbackThursday Can you believe it's been nearly 10 years since our #GeneOntology Consortium meeting in #Cambridge right after Biocuration2013? We are certainly looking forward to seeing many of the same faces-and some new ones-next month in Padua right after #biocuration2023!

Today’s #WisdomWednesday tidbit: if you’re trying to reproduce an older #GeneOntology #EnrichmentAnalysis or need to see what the ontology looked like at a specific point in time, etc., you can find past GO releases going back nearly 20 years at http://release.geneontology.org

RT @ramialison_lab
Calling all #bioinformatics enthusiasts! Check out our website at https://ramialison-lab.github.io for cutting-edge tools like VR-Omics, VR-Cardiomics, MonaGo, and more! #spatialtranscriptomics #geneontology #cardiac #DataVisualization #3D

Don't miss this great #OpenAccess #review in @Non_Coding_RNA about #MicroRNA resources- it has a wonderful section about the contributions and use of the #GeneOntology for examining #transcriptomic data: DOI: 10.3390/ncrna9020018
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RT @UCLgene
Fantastic to see my previous student, Diana Luna Buitrago, writing this great review of microRNA analysis tools: Insights into Online microRNA Bioinformatics Tools https://www.mdpi.com/2311-553X/9/…
https://twitter.com/UCLgene/status/1632682509069680641

The #GeneOntology provides #OpenAccess information on the functions of genes to support research in many fields. We have over 500k #GOannotations for M. #tuberculosis gene products, taxon:1773 & descendants. Find them on @QuickGO_EBI:
https://www.ebi.ac.uk/QuickGO/annotations?taxonId=1773&taxonUsage=descendants

#WorldTBDay #EndTB
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RT @UNYearbook
In 1947–48, the annual death rate from tuberculosis was 4–5 million people, with 40–50…
https://twitter.com/UNYearbook/status/1639322450935545873

Read the #OpenAccess paper at DOI:10.1371/journal.pgen.1010656

For more info about the PANTHER Classification System featured in Fig 4, visit http://www.pantherdb.org/about.jsp
PANTHER also powers the #GeneOntology #EnrichmentAnalysis on our homepage http://geneontology.org 2/2

Did you catch the awesome new @PLOSGenetics paper from @GoniaGuy4 and the #CapelLab @DukeCellBiology? Not only a fantastic in-depth use of the #GeneOntology, but they also used @PANTHER_DB to examine two populations of male germ cells that express low or high levels of DND1
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