We love the point where science meets art.

What you see are cells of the eye that are important for neuron function and health. In the bottom half, where you see all the protrusions, is where the cells and neurons collide. #LoveScience

#sciArt #science #imageAnalysis #Data #FluorescenceFriday

Sip in style: where Art and Science converge 🔬🎨

It's not just a mug, it's an ode to the harmonious blend of artistic expression and data-driven insights.

Shop now and make your coffee breaks truly extraordinary.

Visit our shop and check out our #sciArt mug collection - Link in Bio🔗

#sciArt #scienceart #science #art #microscopy #sciComm #imageprocessing #imageanalysis #sciencefun #microscope

Save the Date for Halfway to I2K: Virtual Tutorials on Bioimage Analysis
📅 Oct 17 - 19, 2023

Workshop Submissions Open - submit by Oct 1!!
Details at: i2kconference.org

Co hosted by @BioImagingNA ,COBA,SoBIAS, and other partner organizations.

#OpenSource #I2K2023 #ImageAnalysis 🔬#bioimageanalysis

Are you looking to upskill your biomedical image analysis skills?
You can book a training with us!!

Register your interest: https://buff.ly/452y8QQ

#upskill #training #imageAnalysis #science

In 2018, #PLOSBiology announced @CellProfiler 3.0, which has since become one of the most used pieces of #ImageAnalysis #software in biology. @perrinepgil looks at the past 20 yrs of bioimage #informatics, highlighting the importance of software usability https://plos.io/3Ofn4cc

When a Neural Network tells you your dog is overdue for a trip to the groomer.

#AI #ImageAnalysis #YOLO

I have been using a few of the @ome packages (bio-formats, OME-TIFF) for a while but didn't realize until today that OME stands for Open Microscopy Environment, and is the name of a consortium of universities and private entities working together to develop open formats and software for microscopy!

https://www.openmicroscopy.org/

#OpenMicroscopy #OpenSource #FOSS #FreeSoftware #Microscopy #ImageAnalysis

We've just finished our course on #Bioimage Analysis with #Napari 🧠🔬, which focusses on the practical application of @napari 🩻🔧. The course material is freely available on my website. Feel free to use and share it! 😙 #OpenScience #ImageAnalysis

🌎 https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/

I might as well have make a pinned post.

We published Vesalius a tool that uses Image analysis methods to analyze spatial-omics data.

A new version will be coming soon that will include multimodal analysis and alignment!

GitHub: https://patrickcnmartin.github.io/Vesalius/

MSB: https://www.embopress.org/doi/full/10.15252/msb.202211080

#SpatialTranscriptomics #ImageAnalysis

I think people doing #ImageAnalysis and #microscopy should know about https://github.com/shssoichiro/oxipng

It is a lossless image optimization tool written in #rust. It rewrites the contents of an image to store it more efficiently, while maintaining exact pixel values.

One of my datasets went from 379 MiB to 162 MiB, a 57% reduction in size (it is even ~100 MiB smaller than the *zip archive* of the original dataset). It downloads faster, it reads faster, and the optimization was done in under 3 minutes.

#TIL that fish red blood cells are nucleated! How did I not know that already?

So many questions!

Never a dull day in the world if #ImageAnalysis

#ScienceMastodon #Fish #Haematology

It's #FluorescenceFriday and I would share a lovely picture, but not everyone knows you can compress #OMETIFF files, so I'm still waiting for the download. 161 GB!

#Multiplex #ImageAnalysis #FileFormats

@bethcimini @PLOSBiology

A great tool for #Reproducibility #DataManagement #labLife #PiLife #Science #ScientificMethod #Microscopy #ImageAnalysis hastags.

@association #AI, @HelmholtzImaging, #HIFIS, #HIDA and #Helmholtz HMC are organizing the 2nd Helmholtz Incubator Summer Academy 👌

"...ranging from fundamental course packages as for instance #Python, or Introduction to Scienctific Metadata to advanced topics as #MachineLearning Based #ImageAnalysis ..."

⏰ 18 to 29 September, 2023
🌍 https://www.helmholtz-hida.de/en/events/incubator-summer-academy-ii/

I have to be up in 5 hours to catch a flight but instead of sleeping, I'm noodling with #ImageJ scripts to detect soil boundaries.

https://forum.image.sc/t/how-to-crop-large-number-of-plant-image-at-root-shoot-junction/82567/4?u=dnmason

#NerdSniped #ImageAnalysis #BioImageAnalysis #PlantScience #Fiji

I have to be up in 5 hours to catch a flight but instead of sleeping, I'm noodling with #ImageJ scripts to detect soil boundaries.

https://forum.image.sc/t/how-to-crop-large-number-of-plant-image-at-root-shoot-junction/82567/4?u=dnmason

#NerdSniped #ImageAnalysis #BioImageAnalysis #PlantScience #Fiji

@eLife Emergent behaviour, XY+t data, #ImageAnalysis, #Tracking What's not to love!

Do you have coding skills and some familiarity with Python programming? Join our online course on Deep Learning for Microscopy Image Analysis! #DL4MIA

Bring your own microscopy datasets for hands-on learning on image denoising and restoration, image segmentation, failure cases and limitations, with practical insights from experienced trainers.

Register by 4 August 👉 https://humantechnopole.it/en/trainings/ht-deep-learning-for-microscopy-image-analysis-2023/

#sciencemastodon #science #ai #python #humantechnopole #deeplearning #imageanalysis

With @florianjug

@makerblock for all things #ImageAnalysis there is https://image.sc

This is the kind of quality banter you can expect if we work together.

#DigitalPathology #Retina #Pathology #Histology #BioImageAnalysis #ImageAnalysis