Gilles San Martin · @sanmartin
7 followers · 6 posts · Server fosstodon.org
🌼🐝 Curious about bees' favourite flowers for collecting pollen? #Metabarcoding is the way to go. But first, you’ll need a sturdy DNA reference database🧬. Find out how we build such databases at CRA-W in our recent paper 🔬 #bioinformatics https://rdcu.be/dj9oC via @biomedcentral
#Metabarcoding #bioinformatics
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
178 followers · 597 posts · Server ecoevo.social**eDNA Metabarcoding Data in the Global Biodiversity Information Facility (GBIF)**
https://biss.pensoft.net/article/110672/
#eDNA #environmentalDNA #metabarcoding #biodiversity #GBIF #dataReuse #standardization #FAIRdata
#eDNA #environmentalDNA #Metabarcoding #biodiversity #GBIF #datareuse #standardization #fairdata
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
176 followers · 591 posts · Server ecoevo.social**Opportunities and inherent limits of using environmental DNA for population genetics**
https://onlinelibrary.wiley.com/doi/full/10.1002/edn3.448
#environmentalDNA #eDNA #PopulationGenetics #phylogeography #metabarcoding
#environmentalDNA #eDNA #populationgenetics #phylogeography #Metabarcoding
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
175 followers · 568 posts · Server ecoevo.socialOur paper is now available in Early View @ Molecular Ecology Resources 'From the Cover'
We provide an overview of a large array of pipelines, the types of reads they can process, the markers they handle, and their features.
"A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses"
https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.13847
#Metabarcoding #bioinformaticpipelines #reviewpaper
ISEP · @isep
31 followers · 16 posts · Server mstdn.science
New #ISEPpapers! Intragenomic diversity of the V9 hypervariable domain in #eukaryotes has little effect on #metabarcoding https://www.cell.com/iscience/fulltext/S2589-0042(23)01368-8 #genomics #protists #algae #plankton #bioinformatics #microbes
#iseppapers #eukaryotes #Metabarcoding #genomics #protists #algae #plankton #bioinformatics #microbes
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
148 followers · 546 posts · Server ecoevo.social**Fungal community dynamics in coarse woody debris across decay stage, tree species, and stand development stage in northern boreal forests**
https://cdnsciencepub.com/doi/10.1139/cjfr-2023-0061
#CoarseWoodyDebris #fungi #metabarcoding #forestry #boreal #Canada
#coarsewoodydebris #fungi #Metabarcoding #forestry #boreal #canada
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
145 followers · 531 posts · Server ecoevo.socialIntragenomic diversity of the V9 hypervariable domain in eukaryotes has little effect on metabarcoding
https://www.cell.com/iscience/pdf/S2589-0042(23)01368-8.pdf
#18S #v9 #IntragenomicVariation #DADA2 #SWARM #metabarcoding
#18S #v9 #intragenomicvariation #dada2 #swarm #Metabarcoding
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
120 followers · 481 posts · Server ecoevo.socialComparison of survey methods for fungi using metabarcoding and fruit body inventories in an altitudinal gradient
https://link.springer.com/article/10.1007/s00203-023-03606-9
#mycology #fungi #biodiversity #metabarcoding #ConventionalMethods #AltitudinalGradient
#mycology #fungi #biodiversity #Metabarcoding #conventionalmethods #altitudinalgradient
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
119 followers · 471 posts · Server ecoevo.socialVertU: universal multilocus primer sets for eDNA metabarcoding of vertebrate diversity, evaluated by both artificial and natural cases
https://www.frontiersin.org/articles/10.3389/fevo.2023.1164206/full
#metabarcoding #vertebrate #primers #universal #16S #12S #COI
#Metabarcoding #Vertebrate #primers #universal #16s #12s #coi
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
116 followers · 433 posts · Server ecoevo.social"Evaluating the diversity of the enigmatic fungal phylum Cryptomycota across habitats using 18S rRNA metabarcoding"
https://www.sciencedirect.com/science/article/abs/pii/S1754504823000259
#cryptomycota #18S #metabarcoding #diversity #fungi #mycology
#cryptomycota #18S #Metabarcoding #diversity #fungi #mycology
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
116 followers · 432 posts · Server ecoevo.social"**Towards exhaustive community ecology via DNA metabarcoding"**
#multimarker #Metabarcoding #molecular #ecology
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
116 followers · 430 posts · Server ecoevo.social"Plant-derived environmental DNA complements diversity estimates from traditional arthropod monitoring methods but outperforms them detecting plant-arthropod interactions"
#metabarcoding #eDNA #conventional #plant #arthropod #interactions
#Metabarcoding #eDNA #conventional #plant #Arthropod #interactions
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
116 followers · 429 posts · Server ecoevo.socialDoes phylogeny explain bias in quantitative DNA metabarcoding?
https://mbmg.pensoft.net/article/101266/
#metabarcoding #phylogeny #quantification #16S #COI
#Metabarcoding #Phylogeny #quantification #16s #coi
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
115 followers · 424 posts · Server ecoevo.social"Comparison of eDNA, bulk-sample metabarcoding, and morphological approaches: A case study of riverine benthic macroinvertebrate communities"
https://www.biorxiv.org/content/10.1101/2023.05.30.542510v1.abstract
#metabarcoding #bulk #benthic #macroinvertebrates #freshwater #biodiversity
#Metabarcoding #bulk #benthic #macroinvertebrates #Freshwater #biodiversity
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
115 followers · 423 posts · Server ecoevo.social"Air-quality networks collect environmental DNA with the potential to measure biodiversity at continental scales"
https://www.cell.com/current-biology/pdf/S0960-9822(23)00515-8.pdf
#biodiversity #air #eDNA #monitoring #multimarker #metabarcoding
#biodiversity #air #eDNA #monitoring #multimarker #Metabarcoding
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
115 followers · 422 posts · Server ecoevo.social"**A novel approach for pollen identification and quantification using hybrid capture-based DNA metabarcoding"**
https://www.authorea.com/doi/full/10.22541/au.168569305.58343243
#pollen #Metabarcoding #captureenrichment #quantification
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
115 followers · 421 posts · Server ecoevo.social"**Assessing the degradation of environmental DNA and RNA based on genomic origin in a metabarcoding context"**
#eDNA #erna #ena #Metabarcoding #decayrates
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
114 followers · 414 posts · Server ecoevo.socialLooking for a new remote-work opportunity, please forward if you know anyone who may be hiring someone with my skillset. TIA!
Molecular ecologist. Full cycle experience: field, lab, analysis, publication. Complex multi-trophic community analyses from bulk soil, water, mixed macroinverts. Freshwater ecology. Mycology.
#metabarcoding #EnvironmentalGenomics #Phylogenetics #Phylogenomics
Bioinformatician. Strong data analysis skills. #Linux #pipelines #db #HPC #HTS #Python #R #Perl
#Metabarcoding #environmentalgenomics #phylogenetics #Phylogenomics #Linux #pipelines #db #hpc #hts #python #r #perl
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
114 followers · 411 posts · Server ecoevo.social
"**Accounting for 16S rRNA copy number prediction uncertainty and its implications in bacterial diversity analyses"**
#16S #metabarcoding #MarkerGeneSequencing #CopyNumber #Diversity #MicrobialDiversity #Bacteria
https://www.nature.com/articles/s43705-023-00266-0
#16s #Metabarcoding #markergenesequencing #copynumber #diversity #microbialdiversity #bacteria
Teresita Porter 🙋🏻♀️ · @DNAdataPhile
110 followers · 377 posts · Server ecoevo.social"All boreal forest successional stages needed to maintain the full suite of soil biodiversity, community composition, and function following wildfire"
#biodiversity #biomonitoring #MolecularEcology #fungi #arthropods #bacteria #soil #wildfire #succession #metabarcoding
#biodiversity #BioMonitoring #MolecularEcology #fungi #Arthropods #bacteria #soil #wildfire #succession #Metabarcoding