Don't miss this great #OpenAccess #review in @Non_Coding_RNA about #MicroRNA resources- it has a wonderful section about the contributions and use of the #GeneOntology for examining #transcriptomic data: DOI: 10.3390/ncrna9020018
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RT @UCLgene
Fantastic to see my previous student, Diana Luna Buitrago, writing this great review of microRNA analysis tools: Insights into Online microRNA Bioinformatics Tools https://www.mdpi.com/2311-553X/9/…
https://twitter.com/UCLgene/status/1632682509069680641

The #python pipeline for PALS- NS , the #nanopore #sequencing workflow that among other things does #microRNA sequencing on the @nanopore has been rewritten in #Perl.
https://www.biorxiv.org/content/10.1101/2022.12.16.520507v1
Only remaining task is the summary script for the RNA counts. How should this be done ?

I do have versions of the summary scripts in both Python (pandas) and R (data.table). Should I I aim for language purity, decrease in coding time or speed (e.g. through duckdb/arrow) at this point ?
@Perl

Just in time for the holidays: I'm delighted to tell you about our latest preprint: miR-2022 is an ancient #microRNA that plays a crucial role in biogenesis of cnidocytes, the cells that typify Cnidaria. https://www.biorxiv.org/content/10.1101/2022.12.15.520629v1

When a jellyfish stings you, thousands of such cells inject you with venom. The thread continues》》》

If you are attending the @NanoporeConf@twitter.com #nanoporeconf next week @MorganMacKenz12@twitter.com and I will presenting what (we think) is the first #microrna + #codingRNA+ #lncRNA #sequencing at Poster 24.
The stuff that one can measure *quantitatively* on @nanopore@twitter.com are limited by one's imagination , understanding of the enzymes of molecular biology & willingness to experiment with this versatile, open and inexpensive platform.
(Note we will be attending virtually).

Was #Oktopus und #Mensch verbindet (bionity)
#Kopffüßler sind hochintelligente Tiere mit komplexem #Nervensystem. Dessen #Evolution ist mit der Entwicklung von auffällig viel neuer #microRNA verbunden, zeigt ein Team um Nikolaus Rajewsky vom Max Delbrück Center in „Center in „Science Advances“.
#mollusken #neurologie #dasneueuniversum
http://dasneueuniversum.com @Albert
https://bionity.com/de/news/1178698/was-oktopus-und-mensch-verbindet.html?WT.mc_id=ca0067

Intro: CERC in Glycomics, Professor of #Chemistry at University of Alberta, Director of a #Glycomics Institute (www.glyco-alberta.ca). I ❤️ #glycotime, studying glycans in #cancer #virology #hostresponse #vaccine response #microbiome etc using our #lectinmicroarray technology and #systemsbio approaches. Also, I study #miRNA #microRNA regulation of glycans and now upregulatory miRNA. #RNA. Am a #momademic #momademia and into #EDI #inclusion #womeninsteam #womeninstem #chembio #chemiverse

IMPORTANT PUB: Here we upend #miRNA dogma! We show up-regulation of proteins by direct action of miRNA is a common mechanism in cancer cells. We found that for ST6GAL1, which controls alpha-2,6-sialylation, miRNAs mainly upregulate the protein and glycosylation. This has important implications for miRNA research, #cancer treatments utilizing miRNA and #glycotime. See https://pubs.acs.org/doi/10.1021/acscentsci.2c00748 to download the paper! #chembio #chemicalbiology #microRNA #RNA