Ariano, B., Mattiangeli, V., Breslin, E. M., Parkinson, E. W., McLaughlin, R., Thompson, J. E., Power, R. K., Stock, J. T., Mercieca-Spiteri, B., Stoddart, S., Malone, C., Gopalakrishnan, S., Cassidy, L. M., & Bradley, D. G. (2022). Ancient Maltese genomes and the genetic geography of Neolithic Europe. Current Biology, 32(12), 2668-2680.e6. https://doi.org/10.1016/j.cub.2022.04.069 #OpenAccess #OA #Journal #Article #Science #Biology #AncientDNA #Ancient #DNA #PopulationGenomics #Europe #Population #Genomics #Archaeology #Archaeodons #Neolithic #European #Migration #Academia #Academic #Academics @science @archaeodons

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

👏🥂🥳 Successful MSc defence by Michael Mitschke @Mol_Ecol
@uniinnsbruck
on #Daphniaturnover and #hybridisation due to rophic shifts.

Congrats to you, MSc. Michael, and thanks to examiners @birgit_sattler
and Barbara Tartarotti-Alfreider!

@moestmar
#PopulationGenomics #lakes

RT @Turtle_Mistress
🐺🧬Thrilled to see our paper now out in @molbioevol!

Using #populationgenomics we tested if #EasternWolves are recent #hybrids between #coyotes and #greywolves, or if they are a distinct taxonomic entity.
https://doi.org/10.1093/molbev/msad055

A great way to kickstart my #Mastodon migration from #twitter With a Preprint 🚨
Led by @Georgette_F from her bachelor 🤯 thesis at @lcgunam. She generated 130+ years old and modern whole-genomes of the (previously) endangered Seychelles paradise flycatcher. We used #PopulationGenomics , demographic reconstructions and fwd simulations to study their genetic load and adaptive potential over time. We ask how this species avoided #extinction and recovered. Brief 🧵 1/7 https://www.biorxiv.org/content/10.1101/2022.12.20.521169v1

A great way to kickstart my #Mastodon migration from #twitter With a Preprint 🚨
Led by @Georgette_F from her bachelor 🤯 thesis at @lcgunam. She generated 130+ years old and modern whole-genomes of the (previously) endangered Seychelles paradise flycatcher. We used #PopulationGenomics , demographic reconstructions and fwd simulations to study their genetic load and adaptive potential over time. We ask how this species avoided #extinction and recovered. Brief 🧵 1/7 https://www.biorxiv.org/content/10.1101/2022.12.20.521169v1

#introduction I'm an Ecological Bioinformatician working on a range of projects, including but not limited to #soil #microbiomes and #metagenomics. As well as #PopulationGenomics including questions around #selection, #introgression and #diversity.
#MolecularEcology #ecologyandevolution

A lot of software can provide genotype likelihood for a #WGS #NGS sample, only one I know provide the likelihood of ALL 10 genotypes for a site, i.e. ANGSD.

Anyone knows any software that calculate all allele likelihood for a site? So I wanna know the probability of observing allele A, C, G, and T in a site. The ones I found only provide probability of one allele (consensus/random).

#Genomics #genomic #PopulationGenomics #bioinformatic #compBio

:boost_ok: :boost_requested: :mastoread:

A lot of software can provide genotype likelihood for a #WGS #NGS sample, only one I know provide the likelihood of ALL 10 genotypes for a site, i.e. ANGSD.

Anyone knows any software that calculate all allele likelihood for a site? So I wanna know the probability of observing allele A, C, G, and T in a site. The ones I found only provide probability of one allele (consensus/random).

#Genomics #genomic #PopulationGenomics #bioinformatic #compBio

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any popgen scientists left here, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any popgen scientists left here, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested:

Anyone out there in #PopGen #Populationgenomics #RNAseq or #Molecular biology have any leads on where to buy duplex-specific nuclease? Main provider is a Russian and unavailable to most because of sanctions. I have not been an alternative supplier or enzyme. Please boost!

#introduction I deleted my Twitter Account! Associate Professor at Northeastern University with expertise in the population and evolutionary #genomics of #marine systems. Enjoy #rstats and #datavis. PI of the Evolving Seas RCN. Avid mountain biker, amateur ceramicist, #antiracist, and data organization snob. #SSEfolks #followforpopgenback #populationgenomics #evolution #blacklivesmatter #esebfolks #asnfolks #genetics #machinelearning #evolvingseas #pottery #ceramics #mountainbiking #MathBio

A question for my #PopulationGenetics #EvolutionaryGenetics friends. In a paper, the authors refer to this figure as a #HaplotypeNetwork. Wouldn't this be a #SplitsTree or #PhylogeneticNetwork? Do they represent different things?

#evolution #PopulationGenomics #bioinformatics #phylogenetics

Let's do it - an #introduction I am a #PhD student in #PopulationGenomics working on #oaks. I am enjoying my path from #MountainForestry to #Genomics because it allows me to dig deeper into life and evolution of trees ❤️ I love #bioinformatics even though I still feel like a total #newbe. Currently at #UniversityGöttingen

@mrtnj How about #ConservationGenomics or #AnimalGenomics or #PopulationGenomics ?

Not sure if I should ask here or the other instance... : Does anyone here use strelka2 for variant calling? I love how it have its own python script to write the regional parallelization for you and can run really fast but starting to wonder why it is not used more in the #ConservationGenomics or #AnimalGenetics as opposed to GATK HaplotypeCaller.

#Genomics #WGS #Bioinfomatics #CompBio #PopulationGenomics

I am also interested in #Anopheles #mosquitoes that transmit #Plasmodium parasites which cause #malaria. I study #PopulationGenomics of these #vectors to find #CrypticSpecies and signals of #NaturalSelection which sometimes turns out to be not so natural (e.g. caused by #insecticides). Understanding patterns of #GeneticDiversity in these insects can help us better control them.
🦟

Looking to connect with #PopulationGenetics, #PopulationGenomics, #HardyWeinberg, #Inbreeding, #GeneticDiversity, #Bioinformatics, #PlantScience, #Forest , #TreeScientist sufferers to share pain and glory lol