RT @NCIJBSloan: New resource coming from #CPTAC! It includes #proteomic and post-translational modifications, whole genome and whole exome sequencing, miRNA and totalRNA sequencing, imaging, and clinical information for over 1,000 cancer patients across 10 tumor types. https://proteomics.cancer.gov/news_and_announcements/introducing-suite-pan-cancer-multi-omic-papers-cptac

RT @NCIDataSci: Access, analyze, & store #proteomic data in the updated search engine, PepQuery2! The tool was designed to empower proteomics researchers with quick #DataAnalysis. See how you can access it: https://datascience.cancer.gov/news-events/news/search-engine-tool-targets-peptide-mass-spectrometry-proteomic-data-sets

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1669273550065225729

UniSpec: A Deep Learning Approach for Predicting Energy-Sensitive Peptide Tandem Mass Spectra and Generating Proteomics-Wide In-Silico Spectral Libraries | https://www.biorxiv.org/content/10.1101/2023.06.14.544947v1 #proteomics

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1666359345498722306

Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05360-7 #proteomics

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1669308792746520577

Evaluation of the Limit of Detection of Bacteria by Tandem Mass Spectrometry Proteotyping and Phylopeptidomics | https://www.mdpi.com/2076-2607/11/5/1170 #proteomics

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1648244984980680706

Depletion of abundant plasma proteins for extracellular vesicle proteome characterization: benefits and pitfalls | https://idp.springer.com/authorize?response_type=cookie&client_id=springerlink&redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1007%2Fs00216-023-04684-w #proteomics

RT @isb_cgc: Proteomic Data Commons release V2.15 case, file, and quant data are now available in #BigQuery. Check out the new tables using our BigQuery Table Search tool at https://isb-cgc.appspot.com/bq_meta_search/ and filter Source by PDC.
#proteome #NCIProteomics #CancerResearch #proteomic https://twitter.com/isb_cgc/status/1622624155496480771/photo/1

Master thesis/student researcher in Microbiology/Systems Biology/Proteomics @RalserLab

We're looking for a Master student/pre-doc to join our lab to study the #proteomic diversity of yeast isolates – join us in #Berlin!

http://shorturl.at/gMQZ9

@ChariteBerlin @ishengtsai

I thought electrospray was controversial! 😂

My rabbit hole today extends to trying to find robust and specific #MassSpec #proteomic and #metabolomics endpoints for apoptosis vs necrosis since the literature is littered with contradictory results for acetaminophen induced liver injury.😅

*New #preprint alert* Patramanis et al. PaleoProPhyler: a #reproducible #pipeline for #phylogenetic inference using #ancient #proteins. 🦴

We developed a pipeline for aligning ancient #peptide data and performing #evolutionary analyses w/it. The pipeline can not only process #proteomic data, but also harness #genetic data in different formats (#CRAM, #BAM, #VCF) and translate it, so as to create reference panels for #phyloproteomics.

https://www.biorxiv.org/content/10.1101/2022.12.12.519721v1?med=mas

#ScienceMastodon #Evolution #EcoEvo