#OpenSoftwareAcceleratesScience! 😍
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RT @ribo_rob
Happy to share @cryocloud_io's first blog article & benchmark! Huge thanks to @SjorsScheres for making #Relion #opensource, & @RadoDanev for uploading the data to #Empiar - this would not have been possible otherwise!
#cryoEM #cloudcomputing https://twitter.com/cryocloud_io/status/1621094105492369408
https://twitter.com/ribo_rob/status/1621094951596564480
#OpenSoftwareAcceleratesScience #RELION #opensource #empiar #CryoEM #cloudcomputing
RT @rdrighetto
I reprocessed the T. kivui 70S ribosomes (EMPIAR-11058) with #RELION-4 to get a ~7 Å map in situ 🤩
This map is now deposited @EMDB_EMPIAR as EMD-16451:
https://www.ebi.ac.uk/emdb/EMD-16451
#RELION #OpenSoftwareAcceleratesScience #teamtomo #cryoET
And below shows the improvement in the reconstruction (coloured per local resolution) from standard #RELION (left) to Johannes' method (right).
We plan to include this functionality in #RELION-4.1, with its beta-release scheduled for mid-2023. At the moment, we are writing a paper describing the method in detail and are working hard on making the code as easy to use and install as you are used to.
@tbharat_lab is a #CryoET OG...go check out this position!
I used the data he shared from the origin #Relion subtomo paper to huge extent in developing #emClarity for my dissertation. (#ribosomes)
#cryoET #RELION #emClarity #ribosomes
RT @EMDB_EMPIAR
A fantastic tutorial-like article by Sofia Lövestam & @SjorsScheres from @MRC_LMB & published in @Faraday_D on #Amyloid #Helical reconstruction in #Relion using #CryoEM data from 3 #EMPIAR entries:
1. http://empiar.org/EMPIAR-10940
2. http://empiar.org/EMPIAR-10943
3. http://empiar.org/EMPIAR-10944 https://twitter.com/SjorsScheres/status/1595742627432898560
#amyloid #helical #RELION #CryoEM #empiar
Just a reminder for those struggling with #amyloid reconstruction in #relion that we recently wrote a tutorial-like paper on this in @Faraday_D, which comes with publicly available data sets at @EMDB_EMPIAR.
https://pubs.rsc.org/en/content/articlelanding/2022/FD/D2FD00034B
We are excited about the below pull request from @TandonSuyash & team at @AMD, with a #HIP implementation for #RELION, which allows running it on @AMD #GPUs! If this works well, it will become part of #RELION-4.1. 😍
#OpenSoftwareAcceleratesScience #FOSS
#hip #RELION #gpus #OpenSoftwareAcceleratesScience #foss
Ok, let's try this out. An also on Twitter @SjorsScheres, but worried about recent developments there, and liking the #opensource and distributed nature of Mastodon. Do have a look at our own open software #RELION (relion.readthedocs.io) for #cryoEM structure determination of proteins.