Sjors Scheres · @SjorsScheres
600 followers · 99 posts · Server fosstodon.org

! 😍
---
RT @ribo_rob
Happy to share @cryocloud_io's first blog article & benchmark! Huge thanks to @SjorsScheres for making , & @RadoDanev for uploading the data to - this would not have been possible otherwise!
twitter.com/cryocloud_io/statu
twitter.com/ribo_rob/status/16

#OpenSoftwareAcceleratesScience #RELION #opensource #empiar #CryoEM #cloudcomputing

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
600 followers · 99 posts · Server fosstodon.org

RT @rdrighetto
I reprocessed the T. kivui 70S ribosomes (EMPIAR-11058) with -4 to get a ~7 Å map in situ 🤩

This map is now deposited @EMDB_EMPIAR as EMD-16451:
ebi.ac.uk/emdb/EMD-16451


#RELION #OpenSoftwareAcceleratesScience #teamtomo #cryoET

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
413 followers · 55 posts · Server fosstodon.org

And below shows the improvement in the reconstruction (coloured per local resolution) from standard (left) to Johannes' method (right).

#RELION

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
401 followers · 51 posts · Server fosstodon.org

We plan to include this functionality in -4.1, with its beta-release scheduled for mid-2023. At the moment, we are writing a paper describing the method in detail and are working hard on making the code as easy to use and install as you are used to.

#RELION

Last updated 2 years ago

b3n · @BenjaminHimes
181 followers · 222 posts · Server cryoem.social

@tbharat_lab is a OG...go check out this position!

I used the data he shared from the origin subtomo paper to huge extent in developing for my dissertation. ()

fediscience.org/@tbharat_lab/1

#cryoET #RELION #emClarity #ribosomes

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
401 followers · 49 posts · Server fosstodon.org

RT @EMDB_EMPIAR
A fantastic tutorial-like article by Sofia Lövestam & @SjorsScheres from @MRC_LMB & published in @Faraday_D on reconstruction in using data from 3 entries:
1. empiar.org/EMPIAR-10940
2. empiar.org/EMPIAR-10943
3. empiar.org/EMPIAR-10944 twitter.com/SjorsScheres/statu

#amyloid #helical #RELION #CryoEM #empiar

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
378 followers · 32 posts · Server fosstodon.org

Just a reminder for those struggling with reconstruction in that we recently wrote a tutorial-like paper on this in @Faraday_D, which comes with publicly available data sets at @EMDB_EMPIAR.

pubs.rsc.org/en/content/articl

#amyloid #RELION

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
356 followers · 21 posts · Server fosstodon.org

We are excited about the below pull request from @TandonSuyash & team at @AMD, with a implementation for , which allows running it on @AMD ! If this works well, it will become part of -4.1. 😍

github.com/3dem/relion/pull/93

#hip #RELION #gpus #OpenSoftwareAcceleratesScience #foss

Last updated 2 years ago

Sjors Scheres · @SjorsScheres
316 followers · 17 posts · Server fosstodon.org

Ok, let's try this out. An also on Twitter @SjorsScheres, but worried about recent developments there, and liking the and distributed nature of Mastodon. Do have a look at our own open software (relion.readthedocs.io) for structure determination of proteins.

#opensource #RELION #CryoEM

Last updated 2 years ago