António Domingues · @keyboardpipette
223 followers · 2102 posts · Server genomic.socialAnother random thought, based on a comment made by a former manager.
The worlds of #bioinformatics and image analysis feel separated*, but I wonder if with the rise of #spatial #genomics and transcriptomics, and the rise of #multimodal data integration with #ML, these two aren't finally coming together.
#bioinformatics #Spatial #genomics #multimodal #ml #ismbeccb2023
Tim Downing · @downingtim
162 followers · 508 posts · Server genomic.socialWe welcome attendees, particularly with a view to developing collaborations relating to #sequencing, #genomics, #transcriptomics, #spatial omics and #scRNAseq. At the Pirbright Institute, we generate a lot of #biological and omic data and wish to work more effectively to deliver data-driven insights into tackling livestock #disease.
#sequencing #genomics #Transcriptomics #Spatial #scrnaseq #biological #disease
Erinnerungen-im-Netz.de :vf: · @erinnerungenimnetz
408 followers · 256 posts · Server hessen.social
🗺️ Wer Spass hat, Standorte mit Hilfe von #Karten zu raten kennt das #geoquiz + @geoquiz 🧩
Hier sind weitere mastodon hashtags (=Themen) für Geo-Interessierte nach wöchentlicher Häufigkeit:
#maps 299 #map 277 #Osint 98 #OpenStreetMap 67 #osm 31 #gis 25 #gischat 24 #mapping 17 #geospatial 13 #spatial 12 #geo 8 #fossgis 7 #osgeo 7 #googlemaps 6 #mapstodon 6 #foss4g 6 #geoobserver 5 #gistribe 5 #gio 3 #geoint 2 #ArcGISOnline 2 #OverpassTurbo 0
#karten #geoquiz #maps #map #osint #openstreetmap #osm #gis #gischat #Mapping #geospatial #Spatial #geo #FOSSGIS #osgeo #GoogleMaps #mapstodon #foss4g #geoobserver #gistribe #gio #geoint #arcgisonline #overpassturbo
Erinnerungen-im-Netz.de :vf: · @erinnerungenimnetz
408 followers · 256 posts · Server hessen.social🗺️ Wer Spass hat, Standorte mit Hilfe von #Karten zu raten kennt das #geoquiz + @geoquiz
Hier sind weitere mastodon hashtags (=Themen) für Geo-Interessierte nach wöchentlicher Häufigkeit:
#maps 299 #map 277 #Osint 98 #OpenStreetMap 67 #osm 31 #gis 25 #gischat 24 #mapping 17 #geospatial 13 #spatial 12 #geo 8 #fossgis 7 #osgeo 7 googlemaps 6 #mapstodon 6 #foss4g 6 #geoobserver 5 #gistribe 5 #gio 3 #geoint 2 #ArcGISOnline 2 #OverpassTurbo 0
#karten #geoquiz #maps #map #osint #openstreetmap #osm #gis #gischat #Mapping #geospatial #Spatial #geo #FOSSGIS #osgeo #mapstodon #foss4g #geoobserver #gistribe #gio #geoint #arcgisonline #overpassturbo
Erinnerungen-im-Netz.de :vf: · @erinnerungenimnetz
408 followers · 256 posts · Server hessen.socialWer Spass hat, Standorte mit Hilfe von #Karten zu raten kennt das #geoquiz + @geoquiz
Hier sind weitere mastodon hashtags (=Themen) für Geo-Interessierte nach wöchentlicher Häufigkeit:
#maps 299
#map 277
#Osint 98
#OpenStreetMap 67
#osm 31
#gis 25
#gischat 24
#mapping 17
#geospatial 13
#spatial 12
#geo 8
#fossgis 7
#osgeo 7
#googlemaps 6
#mapstodon 6
#foss4g 6
#geoobserver 5
#gistribe 5
#gio 3
#geoint 2
#ArcGISOnline 2
#OverpassTurbo 0
#karten #geoquiz #maps #map #osint #openstreetmap #osm #gis #gischat #Mapping #geospatial #Spatial #geo #FOSSGIS #osgeo #GoogleMaps #mapstodon #foss4g #geoobserver #gistribe #gio #geoint #arcgisonline #overpassturbo
KelvinTuong · @KelvinTuong
44 followers · 137 posts · Server genomic.social
RT @aruthak
Really happy to see this #headandneckcancer study come together - "Compartmentalized #spatial profiling of the #HNC tumour microenvironment"
https://bit.ly/3mRCU37
#headandneckcancer #Spatial #HNC
Vanessa Dumeaux · @vdumeaux
75 followers · 157 posts · Server genomic.social
RT @dralexswarbrick
Are you curious how leading #spatial Transcriptomics platforms compare? Tony Wang (@Tony_TP_Wang) performed a head-to-head comparison of the Nanostring GeoMX and 10X Visium platforms on matched human #breastcancer, stored in OCT vs FFPE. Check it out 👇🏽
https://www.biorxiv.org/content/10.1101/2023.04.06.535805v1
Moritz Gerstung · @moritzgerstung
38 followers · 88 posts · Server genomic.social
RT @simocristea
🚨Our new study is out @CellReports!
We use single cell protein quantification & single cell FISH to map #spatial interactions in genetic mosaicism & tumor microenvironment in #Glioblastoma!
Wonderful collaboration w/ @janiszewska_lab @DalitEngelhardt
@Kacper_W_PhD
Deep dive👇
Albert Vilella · @albertvilella
491 followers · 646 posts · Server genomic.social
Albert Vilella · @albertvilella
491 followers · 644 posts · Server genomic.social
Albert Vilella · @albertvilella
491 followers · 643 posts · Server genomic.social
jwrth · @jwrth
14 followers · 10 posts · Server genomic.social
To show the broad applicability of #xDBiT, we generated a multi-organ #spatial #transcriptomics dataset. Analysis showed high correlation with published bulk #RNA-seq data. 4/6
#xdbit #Spatial #Transcriptomics #RNA
jwrth · @jwrth
14 followers · 5 posts · Server genomic.social
I am excited to present multiplexed Deterministic Barcoding in Tissue (xDBiT)🎊. As an extension of #DBiTseq it allows the generation of #spatial #transcriptomics datasets of nine fixed tissue sections in parallel. Paper finally out on @NatComms @Nature 📜 https://www.nature.com/articles/s41467-023-37111-w 1/6
#dbitseq #Spatial #Transcriptomics
KelvinTuong · @KelvinTuong
42 followers · 80 posts · Server genomic.social
RT @Kelvyinzinho
Delighted to share our latest collab project led by @johwirth with @Meier_Lab. 🤩 #spatial #transcriptomic #DBiTseq
Check it out👇🏼
Spatial transcriptomics using multiplexed deterministic barcoding in tissue | Nature Communications https://www.nature.com/articles/s41467-023-37111-w
#Spatial #transcriptomic #dbitseq
Robert Castelo · @robertclab
94 followers · 294 posts · Server genomic.socialRT @hoheyn
OPEN PhD position at our Single Cell Genomics group @cnag_eu. Fully funded MSCA via our ITN project SIGNATURE. #singlecell and #spatial genomics to decipher complexity and cell-cell communication in autoimmune diseases.
Please apply here (Deadline 31/3):
https://euraxess.ec.europa.eu/jobs/69084
Thomas Sandmann · @thomas_sandmann
280 followers · 489 posts · Server genomic.social
Just read the incredible preprint "A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain" by Yao et al https://www.biorxiv.org/content/10.1101/2023.03.06.531121v1. An atlas of the whole mouse brain, with single-cell RNA-seq and spatial (MERFISH) data from > 4 million high-quality cells. The authors describe 5,000 distinguishable "clusters", the most corresponding to neurons with unique patterns of expression of ~ 500 transcription factors.A landmark paper. #scRNA #allen #spatial #neuroscience
#scRNA #allen #Spatial #neuroscience
Robert Castelo · @robertclab
92 followers · 239 posts · Server genomic.socialRT @hoheyn
Please consider joining our group @cnag_eu as:
#Singlecell and #Spatial Genomics Lab Technician.
Position open NOW:
https://recruitment.crg.eu/content/jobs/position/single-cell-genomics-technician
#Barcelona #lifeisbetteratthebeach PLEASE RT.
#singlecell #Spatial #barcelona #lifeisbetteratthebeach
Brendan Innes · @InnesBT
44 followers · 20 posts · Server genomic.socialhttps://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010715
I reviewed this paper, and was pretty excited about it. I don't do any #spatial #scRNAseq, but the tools they've developed for #CellCellInteraction inference in C. elegans (stereotyped cellular loactions + published scRNAseq atlas = genius test-bed for spatial inference methods) are powerful and neato.
Author's tweet: https://twitter.com/eagut/status/1593334779134386176?s=20&t=abTEVMJ2ngD0IXF5RC2Bpg
#Spatial #scrnaseq #cellcellinteraction
Tatsuya Nobori · @tatsuya_nobori
69 followers · 43 posts · Server genomic.socialLooking forward to it!
RT @giacomello_lab@twitter.com
If you are attending #PAG30 don't miss today's talks by @sami_saar@twitter.com, @HildeNelissen@twitter.com and @nobolly@twitter.com on #spatial #biology in #plants! Details at https://plan.core-apps.com/pag_2023/event/3cee484866e6d00c5e492240c4d4942c https://twitter.com/giacomello_lab/status/1611010792945508353
🐦🔗: https://twitter.com/giacomello_lab/status/1613882298600148993
#pag30 #Spatial #biology #plants
Albert Vilella · @albertvilella
474 followers · 387 posts · Server genomic.socialFull table at #SingleCell #Spatial #Platforms http://bit.ly/scplatforms
#singlecell #Spatial #platforms