SueB · @drsbello
338 followers · 2423 posts · Server mstdn.social
The 2nd Machine Learning an Biocuration workshop is scheduled for Sept 21 at 11- 1 PM EDT. Registration is free and open to all https://docs.google.com/forms/d/e/1FAIpQLSecGYIsDutvuDymyCA5kfH8zFOt_bZtwYcfetRPqLqPqPCgeg/viewform?usp=sharing #Biocuration
Bgee database · @bgeedb
45 followers · 53 posts · Server genomic.socialVideos of the #SIB course “Gene expression made useful easily: tools and database of Bgee” (Frederic Bastian & @marcrr):
Introduction of trainers https://www.youtube.com/watch?v=vjrTq0fGCTk
Overview of Bgee https://www.youtube.com/watch?v=x8Fypkwlmuw
Data integration in Bgee https://www.youtube.com/watch?v=hTx4fk77DZ4
Bgee data access https://www.youtube.com/watch?v=5cbXWL9quCA
Bgee tools https://www.youtube.com/watch?v=iUSjT9wDbmU
#biocuration #bioinformatics #RNAseq #SingleCell #GeneExpression #training
#SIB #biocuration #bioinformatics #rnaseq #singlecell #geneexpression #training
Biocuration 2023 · @biocuration2023
31 followers · 113 posts · Server genomic.socialThe recordings from #biocuration2023 have been posted to YouTube!
Check them at: https://www.youtube.com/@biocuration2023
#biocuration #ai #ml #semanticweb #curation #databases #genomics #fair #trust #standards #ontologies #taxonomy
#biocuration2023 #biocuration #ai #ml #semanticweb #curation #databases #genomics #FAIR #trust #standards #Ontologies #taxonomy
Bgee database · @bgeedb
45 followers · 51 posts · Server genomic.social
A few days left to register with early bird rate to our #BC2 #ISBSIB workshop "Standardization of single-cell metadata: an Open Research Data initiative" with Jason Hilton of #cellxgene & David Osumi-Sutherland #EBI #SingleCell #FAIRdata #bioinformatics #biocuration #HumanCellAtlas #FlyCellAtlas https://www.bc2.ch/tutorials-workshops
#bc2 #isbsib #cellxgene #ebi #singlecell #fairdata #bioinformatics #biocuration #humancellatlas #flycellatlas
Monarch Initiative · @monarch_initiative
82 followers · 19 posts · Server genomic.socialA huge congratulations to Nico Matentzoglu for winning the International Society for Biocuration’s Excellence in #Biocuration Advanced Career Award! We are so proud of you! https://link.medium.com/TWQNd3wnLAb
Marc Robinson-Rechavi · @marcrr
860 followers · 1449 posts · Server ecoevo.social
This result which is going around is I think quite important, and shows the importance of reliable and traceable expert curation and annotation of data. It's not because it's well written that it's been expertly verified.
https://arxiv.org/abs/2306.07899
#biocuration #FAIR #SIB
Rob Waterhouse · @rmwaterhouse
485 followers · 128 posts · Server ecoevo.social
Annotate your genes at #VectorBase with #Apollo ... find here the species available for community #biocuration https://vectorbase.org/vectorbase/app/search/organism/GenomeDataTypes/result
#vectorbase #apollo #biocuration
Monarch Initiative · @monarch_initiative
81 followers · 17 posts · Server genomic.socialMonarch’s very own Nico Matentzoglu is nominated for the Excellence in #Biocuration Advanced Career Award through the International Society for Biocuration!
Voting is open today through 6 June 2023!
https://www.biocuration.org/excellence-in-biocuration-advanced-career-award-2023/
#biocuration #careerexcellence #weareproudofyou
Bioregistry · @bioregistry
9 followers · 4 posts · Server fosstodon.org
The Bioregistry resource pages now show project logos! Thanks for the suggestion @Cmungall and the implementation @cthoyt
Here's how it looks for @wikipathways (see yourself at https://bioregistry.io/wikipathways)
#python #semanticweb #foss #bioregistry #biopragmatics #biocuration
#python #semanticweb #foss #bioregistry #biopragmatics #biocuration
Bgee database · @bgeedb
45 followers · 45 posts · Server genomic.socialThese observations of conserved homologous expression are easy to reproduce! Go to a gene page, click "orthologs", and chose a taxonomic level, here Theria:
TLK1 https://bgee.org/gene/ENSG00000198586/#orthologs -> https://bgee.org/analysis/expr-comparison?data=4a7fc4f9fba1b1e63c458881a6ca8f5b61367fd2
HAT1 https://bgee.org/analysis/expr-comparison?data=d9510c624d21931605aa16a7c378f8ede9ce4fe6
#bioinformatics #biocuration #evodevo #ortholog #homology
#bioinformatics #biocuration #evodevo #ortholog #homology
Bioregistry · @bioregistry
5 followers · 2 posts · Server fosstodon.orgWe now have mastodon support thanks to @egonw (see code changes at https://github.com/biopragmatics/bioregistry/pull/817) #biocuration #semantics #semanticweb
#biocuration #semantics #semanticweb
Marc Robinson-Rechavi · @marcrr
839 followers · 1206 posts · Server ecoevo.socialWelcome @pombase to #MastodonScience #biocuration #bioinformatics #yeast
#MastodonScience #biocuration #bioinformatics #yeast
Bgee database · @bgeedb
46 followers · 41 posts · Server genomic.socialWe still have some seats available for the #SIB course on:
Gene expression made useful easily: tools and database of Bgee
live-streamed on 26 May 2023
https://www.sib.swiss/training/course/20230526_BGEEL
#biocuration #bioinformatics #RNAseq #SingleCell #GeneExpression #training
#SIB #biocuration #bioinformatics #rnaseq #singlecell #geneexpression #training
Marc Robinson-Rechavi · @marcrr
838 followers · 1175 posts · Server ecoevo.social#biocuration2023 parallel session "AI and Text Mining" starting with Kimberly Van Auken: community curation and artificial intelligence are solutions to scale #biocuration. ACKnowledge (Author Curation to Knowledgebase) combines them at #WormBase https://afp.textpressolab.com/about
#biocuration2023 #biocuration #WormBase
Marc Robinson-Rechavi · @marcrr
837 followers · 1161 posts · Server ecoevo.socialFrederic Bastian @bgeedb #SIB: scFAIR: standardization and stewardship of #singlecell metadata. Single cell data comes with a large complexity of protocols and analyses, and new cell types, making #biocuration and #FAIR metadata very complicated. #biocuration2023
#SIB #singlecell #biocuration #FAIR #biocuration2023
Marc Robinson-Rechavi · @marcrr
837 followers · 1156 posts · Server ecoevo.socialConclusion of Marcus Roos: priority of #biocuration should be at least as high for #FAIR for machines as for content quality #biocuration2023 #FAIRdata @biocuration2023
#biocuration #FAIR #biocuration2023 #fairdata
Bgee database · @bgeedb
45 followers · 35 posts · Server genomic.socialHi #biocuration2023 @biocuration2023! All the team is here, and we invite you to explore our newly released pages to browse and select annotated raw data https://bgee.org/search/raw-data and gene expression calls https://bgee.org/search/expression-calls #biocuration #bioinformatics #RNAseq #SIB
#biocuration2023 #biocuration #bioinformatics #rnaseq #SIB
Marc Robinson-Rechavi · @marcrr
834 followers · 1115 posts · Server ecoevo.socialWhat do we need for plant diversity to be well understood and documented?
First collect, collect and collect.
Nice interesection of my interests in #biocuration and #ecoevo.
Paula Leitman #biocuration2023
#biocuration #ecoevo #biocuration2023
Marc Robinson-Rechavi · @marcrr
833 followers · 1111 posts · Server ecoevo.social
Bgee database · @bgeedb
43 followers · 32 posts · Server genomic.socialAll of the Bgee team will be at #biocuration2023 @biocuration2023 this Monday-Wednesday, meet us to discuss #RNAseq bulk & #singlecell, anatomical and developmental #ontologies, and how to make #GeneExpression data useful. #SIB #bioinformatics #biocuration
#biocuration2023 #rnaseq #singlecell #Ontologies #geneexpression #SIB #bioinformatics #biocuration