BioCyc and Pathway Tools · @biocyc
0 followers · 1 posts · Server genomic.social


This is the official account for BioCyc and Pathway Tools. The account is currently being managed by @smpaley. I'll be posting announcements, answering any questions, and boosting relevant posts from members of our team and user community (will follow and engage with posts carrying hashtag ).

biocyc.org

#introduction #biocyc

Last updated 2 years ago

Suzanne Paley · @smpaley
85 followers · 676 posts · Server universeodon.com

Currently developing a cool new visualization tool for comparing functional capabilities across various genomes, and I'm pretty pleased with what I have so far. Expect some version of this to be present in the next release!

#biocyc #bioinformatics #genomics #dataviz

Last updated 2 years ago

Suzanne Paley · @smpaley
76 followers · 568 posts · Server universeodon.com

We invite all interested parties to attend the upcoming CyanoCyc online mini-symposium on March 1, 9am-12pm PST to hear about some of the exciting research that has been helped by the use of tools and learn how to use them for your own research.

Please register at tinyurl.com/z387m7f6.

#cyanobacteria #biocyc #bioinformatics

Last updated 2 years ago

Suzanne Paley · @smpaley
76 followers · 568 posts · Server universeodon.com

has a new portal CyanoCyc, cyanocyc.org, highlighting genomes, with literature curation for four important organisms.

#biocyc #cyanobacteria

Last updated 2 years ago

Suzanne Paley · @smpaley
76 followers · 568 posts · Server universeodon.com

A couple of questions.

1) If I (or more likely, my colleague) were to create an official account for our website, , is there a convenient way to manage and track that account together, alongside my personal account? Note that I use the website (in advanced mode, or whatever they call the multi-column view), not any app, and the two accounts would likely be on different instances (unless I move my personal account). The birdsite had an easy way to log into both and switch which account you were viewing/posting from.

2) If I follow a hashtag, am I seeing all occurrences of that hashtag only on my own instance, or on all instances that my instance has federated with?

#Mastodon #biocyc

Last updated 2 years ago

Suzanne Paley · @smpaley
74 followers · 523 posts · Server universeodon.com

Upcoming tutorial for the newest upgrade to the curated genome database for Staphylococcus aureus NCTC 8325!

Wed, 18th Jan 2023 from 10am-11:30am San Francisco (PST) Time

Register at tinyurl.com/2p8aws6k.

#biocyc #bioinformatics #genomics

Last updated 2 years ago

Lisa Moore · @Lisa_R_Moore
17 followers · 18 posts · Server genomic.social

Tomorrow I'll be giving a tutorial for the newest curation upgrade to the genome database for aureus NCTC 8325!
Wed, 18th Jan 2023 from 10am-11:30am San Francisco (PST) Time
Go to tinyurl.com/2p8aws6k to register.

#biocyc #staphylococcus

Last updated 2 years ago

Suzanne Paley · @smpaley
33 followers · 257 posts · Server universeodon.com

Proud to report that, due to our publications over the years about EcoCyc, MetaCyc, PathwayTools and , members of my group (including yours truly) have been named to the annual Highly Cited Researchers 2022 List for .
sri.com/press/announcements/sr

#biocyc #biology

Last updated 2 years ago

Suzanne Paley · @smpaley
42 followers · 351 posts · Server universeodon.com

Proud to report that, due to our publications over the years about EcoCyc, MetaCyc, PathwayTools and , members of my group (including yours truly) have been named to the annual Highly Cited Researchers 2022 List for .
sri.com/press/announcements/sr

#biocyc #biology

Last updated 2 years ago

Suzanne Paley · @smpaley
22 followers · 222 posts · Server universeodon.com

I just sent out customized email update notifications to nearly a hundred users who requested to be notified when there is new curation for particular genes and/or pathways of interest to them. We have over 300 users currently signed up for update notifications, but email is only sent when there is new curation in their particular interest areas. To learn more about how to sign up for update notifications, see biocyc.org/user-subscriptions..

#biocyc #bioinformatics

Last updated 2 years ago

Suzanne Paley · @smpaley
42 followers · 351 posts · Server universeodon.com

I just sent out customized email update notifications to nearly a hundred users who requested to be notified when there is new curation for particular genes and/or pathways of interest to them. We have over 300 users currently signed up for update notifications, but email is only sent when there is new curation in their particular interest areas. To learn more about how to sign up for update notifications, see biocyc.org/user-subscriptions..

#biocyc #bioinformatics

Last updated 2 years ago

Suzanne Paley · @smpaley
22 followers · 221 posts · Server universeodon.com

Pleased to report that and PathwayTools versions 26.5 have just been released! This is a major release (we do two major releases per year), so includes both the biocyc.org/ website and the downloadable PathwayTools software.

BioCyc is a collection of Pathway/Genome DBs for over 20,000 organisms, plus tools for exploring them. Our flagship databases EcoCyc and MetaCyc are painstakingly curated from the biological literature, and are free for all.

#biocyc #bioinformatics #genomics

Last updated 2 years ago

Suzanne Paley · @smpaley
42 followers · 351 posts · Server universeodon.com

Pleased to report that and PathwayTools versions 26.5 have just been released! This is a major release (we do two major releases per year), so includes both the biocyc.org/ website and the downloadable PathwayTools software.

BioCyc is a collection of Pathway/Genome DBs for over 20,000 organisms, plus tools for exploring them. Our flagship databases EcoCyc and MetaCyc are painstakingly curated from the biological literature, and are free for all.

#biocyc #bioinformatics #genomics

Last updated 2 years ago

Suzanne Paley · @smpaley
42 followers · 351 posts · Server universeodon.com

@Lisa_R_Moore

Here is the full list of 37 resources that the Global Biodata Commission designated as Global Core Biodata Resources today. It's an outstanding list, and I'm proud to see EcoCyc among them.

I've been working on EcoCyc and associated projects for nearly 30 years now, and we have an amazing team that works hard to put out a gold-standard product, so it's great to see it get the recognition it deserves!

globalbiodata.org/scientific-a

#bioinformatics #biocyc #opendata

Last updated 2 years ago

Suzanne Paley · @smpaley
11 followers · 39 posts · Server universeodon.com

Just joined and still finding my way around, so .

Longtime computer scientist in , one of the few lucky people who get to program in for a living! Principal developer of (biocyc.org) and .

Interests include , & . For fun, I read books and#tapdance (more enthusiastic than skilled!).

I never had much presence on twitter, don't think I'm very good at social media (which is ok, I'm good at other things).

#introduction #bioinformatics #lisp #biocyc #pathwaytools #history #Science #politics

Last updated 2 years ago