To get a comprehensive list of #neuropeptides, we combined #bioinformatic screening and mass spectrometry in collaboration with Amanda Kieswetter and Liesbet Temmerman at KU Leuven. We found 15 new proneuropeptides and confirmed the endogenous processing (cleavage, amidation etc) of many of them. #Nematostella has at least 33 neuropeptide precursors.
#cnidaria #neuroscience

Du liebst Tiere & Forschung, möchtest oder hast bereits in dieser Richtung gearbeitet, dann ist das FLI vielleicht das richtige für dich. Hier wird auf Spitzenniveau geforscht. Hier kannst du ebenso eine Ausbildung zum Biolaborant*in beginnen, als auch einen PhD machen oder als PostDoc arbeiten. Auch für hochqualifizierte ITler ist was dabei. Schaut doch einfach mal vorbei 👉🏻 https://www.fli.de/de/karriere/stellenangebote/ #FLI #Jobs #bioinformatic #postdoc #PhD #BTA #Tierpfleger #KI #AI #IT

RT @emilyncosta
#Hindi 🇮🇳 @nextflowio & @nf_core #bioinformatic 🧬🖥️🦠on-line training प्रशिक्षण - Session 1 by @abhi18av
https://www.youtube.com/watch?v=84XtbqRkKSk

RT @emilyncosta
#Hindi 🇮🇳 @nextflowio & @nf_core #bioinformatic 🧬🖥️🦠on-line training प्रशिक्षण - Session 1 by @abhi18av
https://www.youtube.com/watch?v=84XtbqRkKSk

That feel of doing sequence alignment at 125 GB/s across 15,000 CPU

Minor update of 2021/2022 SRA data will be coming soon to serratus.io :rna: 🦠

Just #bioinformatic things <3

And finally, some skills that will be helpful: #bioinformatic and #statistical skills: population genetics/#genomics, quantitative genetics, #RNAseq, #ATACseq, integration of #multi_omics data; willingness to get involved in data generation (wet lab) is a plus.

A lot of software can provide genotype likelihood for a #WGS #NGS sample, only one I know provide the likelihood of ALL 10 genotypes for a site, i.e. ANGSD.

Anyone knows any software that calculate all allele likelihood for a site? So I wanna know the probability of observing allele A, C, G, and T in a site. The ones I found only provide probability of one allele (consensus/random).

#Genomics #genomic #PopulationGenomics #bioinformatic #compBio

:boost_ok: :boost_requested: :mastoread:

A lot of software can provide genotype likelihood for a #WGS #NGS sample, only one I know provide the likelihood of ALL 10 genotypes for a site, i.e. ANGSD.

Anyone knows any software that calculate all allele likelihood for a site? So I wanna know the probability of observing allele A, C, G, and T in a site. The ones I found only provide probability of one allele (consensus/random).

#Genomics #genomic #PopulationGenomics #bioinformatic #compBio

👉
Last week our colleagues hosted #scientists from the State Scientific Research Institute of Laboratory Diagnostics and Veterinary and Sanitary Expertise in #Ukraine.

A productive week full of #training in serological methods for the detection of #antibodies against Crimean-Congo haemorrhagic fever virus and #bioinformatic tools as part of the German Biosecurity Programme, funded by the German Federal Foreign Office, lies behind the scientists. @AuswaertigesAmt

Here’s my long postponed #introduction!

I’m a Swiss PhD student at Trent University - Canada, working on the #Evolution of two North American #deer species through #bioinformatic analyses of #hybridisation #Demography and #ancientDNA.

I am also interested in #Genomics of speciation, extinction, adaptation, #PopGen etc… 🦌 🧬

Hello #ScienceMastodon #AcademicMastodon !

#introduction: My name is Selene Fernández, an I'm a researcher interested in all things #RNA in particular #lncRNAs and their #evolutionarydynamics. My group, the #RegRNALab focuses on studying #lncRNAs in plants 🌱 and animals (flies, 🦎, humans) using #genomic and #bioinformatic approaches.

Other interests include promoting #WomenInSTEM , #reading , #dancing , #scuba_diving and #languages (🇫🇷, 🇬🇧, 🇪🇸, 🇵🇹, 🇯🇵)

Curious to see how this community evolves 😉

We had our Diatom DNA metabarcoding – Initiation training – 7 to 10 November 2022. 13 interested people, good mood 😃
https://www6.inrae.fr/reseau-adn-o/Reseau-ADN-O/Actualites/Diatom-DNA-metabarcoding-Initiation-training-7-to-10-November-2022

#metabarcoding #dna #edna #barcoding #bioinformatic #MolecularEcology #biomonitoring #freshwater #ecology

We had our Diatom DNA metabarcoding – Initiation training – 7 to 10 November 2022. 13 interested people, good mood 😃 #metabarcoding #dna #edna #barcoding #bioinformatic #MolecularEcology #biomonitoring #freshwater #ecology

A new #mastodon user after becoming increasingly disappointed with Twitter.

An #introduction to me:
- I am a #bioinformatician in the Hunt lab at the #UniofBath looking at #rnaseq in #strongyloides using #bioinformatic tools and custom #python scripts.
- I love #running with a strong attraction to the #hills and #mountains.
- Gradually #bagging the #munro (25 tops) and #hewitt (22 tops) peaks in the #uk.

Looking to share my #work and #running while not taking life too seriously.

@caterpillar_coevolution Sorry for becoming the bearer of bad news but the dopamine hit stops that moment you got that zero exit code along with empty output files.

#bioinformatic #hpc #Genomics

#Introduction

My name is Rory and I am a #molecular #microbiology researcher from the UK. My field of study is #epidemiology and #genomics of #AMR #bacteria from different niches around the world using #WGS #bioinformatic analysis.

#WESkit is a workflow execution service and aims at being compliant to the #GA4GH WES standard. The standard tries to define a REST service for executing workflows in a workflow-engine agnostic way.

Currently, WESkit implements this for the #Snakemake and #Nextflow engines. The engines can be run locally in a Celery worker container, or remotely via SSH or SSH-based submission into an #LSF or #SLURM cluster. It is left to the engine where to run the actual #bioinformatic workload.

RT @pierre_marijon@twitter.com: Hi

A new blog article not really scientific sorry.

But there is a link anyway:)

Why I stop C++ https://blog.pierre.marijon.fr/why-i-stopped-c/

Your feedback is welcome !!!

#rust #bioinformatic #cpp

🐦🔗: https://twitter.com/pierre_marijon/status/1061981692305555457