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#DataVisualization #Bionformatics #Genomics

A question for my #bionformatics #HPC friends: Has anyone implemented checkpoint-and-restore for PAML codes? We have a researcher whose requests for very long jobs have reached very long runtime levels (weeks and even months of single-process continuous running) and it’s beginning to interfere with normal system maintenance, besides being difficult to support operationally. We’ve tried encouraging use of parallelized newer codes, but no luck: they insist on using older single-threaded ones.

Kicking off the new year with the 3rd edition of the Unix and Shell Scripting for Bioinformatics with the brilliant João Ferreira Nunes, MSc (Federal University of Rio de Janeiro, Brazil)

#Bionformatics #ShellScripting #coding #Genomics

@contaminatedsci

I’m also following along for legit answers. Team #genomics #bionformatics, what’s the best deal these days?

/cc @ewanbirney

RT @CornilleAmand
#jobalert #genomics #ecology # evolution #bionformatics ! Join us & have fun on fruit trees! Please share ⁦@eseb_org⁩ ⁦@OfficialSMBE⁩ ⁦@PostdocVoice⁩ ⁦⁦@molecology⁩ ⁦@ResearchGenome⁩ ⁦@SfbiFr⁩ ⁦@WBDSLA⁩ https://ecoevo.social/@amandinecornille/109423614181223943

cxSV spotted 🧬 !
🤔

#bionformatics #NGS #sequencing #friday

Hi there!, here's another #introduction for the latest migration wave:

I’m a research associate in the Waller lab at The University of Cambridge. I'm interested in 🧬 and :protein: #evolution #genomics #bionformatics #symbiosis #plastid #mitochondria. I work on these topics in #MicrobialEukaryotes #protists #FreeLiving #parasites

BTW, don't forget that hashtags are very important in :mastodon:

see an example here:
https://genomic.social/@dsalas/109313672489288666

Experienced #biology grant writers, how do you personally estimate the time the various work packages will take? For example, I'm trying to plan out how long it will take to run various #bionformatics packages I never have before, and that were benchmarked on Arabadopis or Drosophila rather than a vertebrate genome like I plan to.

#introduction I’m a research associate in the Waller lab at The University of Cambridge. I'm interested in #evolution #genomics #bionformatics #symbiosis #plastid #mitochondria. I work on these topics in #MicrobialEukaryotes #protists #FreeLiving #parasites