dincaslan · @singlecell
9 followers · 43 posts · Server genomic.socialAfter a long time, I did log in to my #biostars account that I created 6+ years ago to be able to ask questions and get some help.
Both Bioconductor and Biostars community were amazing for newbies like me. I learnt a lot; if not, I felt more comfortable due to community’s presence for the support despite my dumbest questions ever. Thanks a lot for the patience and support. Love you all 🤓
Pierre Lindenbaum · @yokofakun
923 followers · 1183 posts · Server genomic.socialhttps://ai.tinybio.cloud/experiment-generator "Today we are publically releasing a new large language model tool for brainstorming scripts based on the types of samples you have access to. The main use case that we want to solve is the cold start problem when you're staring at a blank screen trying to figure out what to run next. For each pipeline, before it is generated, you can also edit the software stack used so that you can incorporate your feedback before the script is generated." (via #biostars) #ai
Pierre Lindenbaum · @yokofakun
899 followers · 1025 posts · Server genomic.social... then I said to myself, in french ...
"PUTAIN MAIS C'EST QUI CE CON ?"
#sorrynotsorry #biostars #nextflow #nfcore #bioinformatics
Pierre Lindenbaum · @yokofakun
879 followers · 943 posts · Server genomic.socialasked #biostars https://www.biostars.org/p/9554494/ #UKBiobank #dnanexus #wdl "UKBiobank / DNANexus. Working with WDL and directories."
#biostars #ukbiobank #dnanexus #wdl
Pierre Lindenbaum · @yokofakun
870 followers · 896 posts · Server genomic.social
Pierre Lindenbaum · @yokofakun
854 followers · 847 posts · Server genomic.social
Pierre Lindenbaum · @yokofakun
826 followers · 754 posts · Server genomic.social#biostars answer: https://www.biostars.org/p/9550377/#9550382 "speeding up bcftools view" using #nextflow
Pierre Lindenbaum · @yokofakun
747 followers · 610 posts · Server genomic.social
https://github.com/Technion-Kishony-lab/quibbler (via #biostars) "Quibbler is a toolset for building highly interactive, yet reproducible, transparent and efficient data analysis pipelines. Quibbler allows using standard Python syntax to process data through any series of analysis steps, while automatically maintaining connectivity between downstream results and upstream raw data sources."
Pierre Lindenbaum · @yokofakun
637 followers · 491 posts · Server genomic.social
Pierre Lindenbaum · @yokofakun
598 followers · 403 posts · Server genomic.social
excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies https://www.biorxiv.org/content/10.1101/2022.11.21.517407v1 (via #biostars ) #bed #assembly
Pierre Lindenbaum · @yokofakun
396 followers · 187 posts · Server genomic.social
https://github.com/kcleal/gw "GW is a fast #browser for genomic sequencing data (#bam/.cram format), used directly from the terminal." #ngs #bioinformatics #cli #visualization (via #biostars )
#biostars #visualization #cli #bioinformatics #ngs #bam #browser
Pierre Lindenbaum · @yokofakun
396 followers · 186 posts · Server genomic.social
https://github.com/koesterlab/datavzrd "A tool to create visual and interactive HTML #reports from collections of #CSV/#TSV tables." (via #biostars ) #visualization
#visualization #biostars #CSV #reports
Pierre Lindenbaum · @yokofakun
396 followers · 185 posts · Server genomic.social
Pierre Lindenbaum · @yokofakun
396 followers · 185 posts · Server genomic.social#biostars Q: "I must to design a #vaccine and use #bioinformatics on it."#kamoulox https://www.biostars.org/p/9544884/ 🤔
#kamoulox #bioinformatics #vaccine #biostars