conda hates me. I just messed around for nearly two days trying to get BUSCO installed, both my laptop and a cluster. I can't get it going...

I love the old BUSCOv3 virtual machine, but I have 5 mammalian genomes to evaluate and according to manual, 12CPUs was 6 days/genome, which means this may work, but at glacial scale.

So, anyone out there have *any* version of BUSCO running on something not a potato? Can provide fasta and lineage files, and my endless gratitude. 😬

#BUSCO #genomics

Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
• Introduction to molecular evolution & phylogenetics
• Orthology-focused arthropod comparative genomics
• Duplication of genes and genomes, expression
with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi https://www.sib.swiss/training/course/20230830_COMGE

Looks interesting, Heng Li proposes a faster #BUSCO: "miniBUSCO achieves a 14-fold speedup over BUSCO. Furthermore, miniBUSCO reports a more accurate completeness of 99.6% than BUSCO’s completeness of 95.7%, which is in close agreement with the annotation completeness of 99.5% for T2T-CHM13"
https://www.biorxiv.org/content/10.1101/2023.06.03.543588v1 #bioinformatics #HumanGenome #genomics

queria uma au yeonbin legal e finalizada pra ler mas eu ja li quase todas do twitter #busco ajuda