RT @saezlab
1/ 📢 New protocol paper for #CellCellCommunication! Our manuscript presents a pipeline for robust and generalizable cell-cell communication analysis of complex single-cell datasets, combining the best of LIANA & Tensor-cell2cell! 💥🔬 #CompBio #SingleCell
https://doi.org/10.1101/2023.04.28.538731

A new tool, COMMOT, for inferring cell-cell communication in spatial transcriptomics data. It takes into account the competition between different L-R pairs and the spatial distance between cells. It works on data generated from a variety of spatial techniques such as Visium, MERFISH, Slide-seq, seqFISH+ and STARmap. #spatialtranscriptomics #cellcellcommunication #python #bioinformatics
https://www.nature.com/articles/s41592-022-01728-4