While there is one XS package that wraps over , I will be using in

Sequence alignment tasks benefit greatly from multithreaded implementations of the dynamic programming to align a single sequence against another , though one often uses threads to parallelize alignment tasks as database searches that use alignments for approximate text matching are embarrassingly parallel tasks.

Thus, seems a reasonable choice to parallelize

#edlib #ffi #perl #forkmanager

Last updated 1 year ago

Just released an Alien package

metacpan.org/pod/Alien::SeqAli

to beef up the biological sequence alignment tools available from .
This one wraps the command line tool, static and dynamic library of as a step towards the development of a uniform OO API alignment tool for .
The library edlib is one of the fastest C libraries that use edit(Levenshtein) distance to compare two strings.
In fact it is so fast, that no one had bothered converting it to a multithreaded one!

#perl #edlib #bioinformatics

Last updated 1 year ago