Stephen Matheson🌵🌲 · @sfmatheson
714 followers · 721 posts · Server fediscience.orgNow Siddharth Dey, UCSB
https://deylab.com/
Photo-sensitive barcodes combined with topologically imposed light gradients enable spatially-resolved #SingleCell #transcriptomics and #epigenomics
a new technology: scSTAMP-seq which enables use of light patterning to achieve dynamic spatial resolution
adaptation of STAMP-seq
also applying to DNA methylation
https://www.biorxiv.org/content/10.1101/2023.05.06.539708v1
#cssinglecells23 #epigenomics #Transcriptomics #SingleCell
Stephen Matheson🌵🌲 · @sfmatheson
709 followers · 689 posts · Server fediscience.orgSecond half of morning session on Emerging concepts in gene regulation** **kicks off with
Songpeng Zu, UCSD
https://beyondpie.github.io/
Comprehensive single-cell analysis of chromatin accessibility in the adult mouse #brain
117 dissections (!) across whole mouse brain, using SnapATAC2
Putting data on CATlas (catlas.org)
https://www.biorxiv.org/content/10.1101/2023.04.16.536509v1
#SingleCell
#chromatin
#epigenomics
#neuroscience
#CSSingleCells23
#cssinglecells23 #neuroscience #epigenomics #chromatin #SingleCell #brain
jobRxiv · @jobRxiv
999 followers · 3570 posts · Server mas.to
1 Postdoc, 1 Postdoc/Lab manager & 2 PhD students in Immuno-epigenetics
IMol PAS
See the full job description on jobRxiv: https://jobrxiv.org/job/imol-pas-27778-1-postdoc-1-postdoc-lab-manager-2-phd-students-in-immuno-epigenetics/?feed_id=55238
#ScienceJobs #hiring #research #epigenetics #epigenomics #immunology #crispr #degron
Warsaw #Poland #Bioinformatician #Man...
https://jobrxiv.org/job/imol-pas-27778-1-postdoc-1-postdoc-lab-manager-2-phd-students-in-immuno-epigenetics/?feed_id=55238
#man #bioinformatician #Poland #degron #crispr #immunology #epigenomics #epigenetics #research #hiring #ScienceJobs
PhiloNeuroSci📚👨🏿🔬🧠🧫🔬🧬💻📊📈📉 · @PhiloNeuroScie
562 followers · 394 posts · Server neuromatch.social
SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data
#transcriptomics #ATAC #epigenomics #genomics #bioinformatics
https://doi.org/10.1038/s41587-023-01716-9
#transcriptomics #atac #epigenomics #genomics #bioinformatics
PLOS Biology · @PLOSBiology
4799 followers · 1239 posts · Server fediscience.org
#ExperimentalEvolution of the halophilic #alga #Dunaliella reveals evolution of reduced #plasticity in less predictable environments across 3 biological levels – #epigenomics, #transcriptomics & cell morphology. Christelle Leung, @Lmchev &co #PLOSBiology https://plos.io/3FTyejq
#plosbiology #Transcriptomics #epigenomics #plasticity #dunaliella #alga #ExperimentalEvolution
PLOS Biology · @PLOSBiology
4798 followers · 1235 posts · Server fediscience.org
#ExperimentalEvolution of the halophilic #alga #Dunaliella reveals evolution of reduced #plasticity in less predictable environments across 3 biological levels – #epigenomics, #transcriptomics & cell morphology. Christelle Leung, @Lmchev &co #PLOSBiology https://plos.io/3FTyejq
#plosbiology #Transcriptomics #epigenomics #plasticity #dunaliella #alga #ExperimentalEvolution
PLOS Biology · @PLOSBiology
4798 followers · 1229 posts · Server fediscience.org
#ExperimentalEvolution of the halophilic #alga #Dunaliella reveals evolution of reduced #plasticity in less predictable environments across 3 biological levels – #epigenomics, #transcriptomics & cell morphology. Christelle Leung, @Lmchev &co #PLOSBiology https://plos.io/3FTyejq
#plosbiology #Transcriptomics #epigenomics #plasticity #dunaliella #alga #ExperimentalEvolution
PhiloNeuroSci📚👨🏿🔬🧠🧫🔬🧬💻📊📈📉 · @PhiloNeuroScie
540 followers · 359 posts · Server neuromatch.socialRetrospective analysis of #enhancer activity and #transcriptome history
#transcriptomics #epigenomics
https://doi.org/10.1038/s41587-023-01683-1
#enhancer #transcriptome #transcriptomics #epigenomics
PhiloNeuroSci📚👨🏿🔬🧠🧫🔬🧬💻📊📈📉 · @PhiloNeuroScie
533 followers · 323 posts · Server neuromatch.social"...we correctly model reported changes in phenotype that occur as a result of transcription factor perturbation"🤯
Dissecting cell identity via network inference and in silico gene perturbation #transcriptomics #epigenomics
https://doi.org/10.1038/s41586-022-05688-9
ISOGG · @isogg
284 followers · 38 posts · Server genealysis.social“In a first for the field of epigenomics, scientists at the Baylor College of Medicine (BCM) have demonstrated the feasibility of studying systemic differences in DNA methylation at the population level through a new method called target-capture bisulfite sequencing.” #dna #isogg #internationalsocietyofgeneticgenealogy #epigenomics #geneadons
#epigenetics
https://www.genengnews.com/topics/omics/baylor-study-suggests-commercial-methylation-arrays-not-ideal-for-population-epigenetics/
#dna #isogg #internationalsocietyofgeneticgenealogy #epigenomics #geneadons #epigenetics
Martijn van den Broek · @M_Famyfuerza
32 followers · 318 posts · Server mastodon.scotRT @EpigenomicMed
We have a post-doctoral position available in epigenomics & ageing – exploring the functional impact of the DNA methylome in ageing/ageing-related disease. Funded by @impetusgrants
https://www.qmul.ac.uk/jobs/vacancies/items/7783.html
@QMULWHRI @QMULepigenetics #epigenomics #ageing
Haojia Wu · @haojiawu
24 followers · 9 posts · Server mastodon.haojia-wu.comWonder how to overlay H3K27me3, H3K4me1 (or H3K4me2) and H3K36me3 profiles on the same cell? Researchers have modified the single cell CUT&RUN and developed a new technique called MULTI-seq to accomplish it. Check it out. #singlecell #tech #cut&run #epigenomics #profiling #sequencing
https://www.nature.com/articles/s41587-022-01522-9
#singlecell #tech #cut #epigenomics #profiling #sequencing
Gert Jan C. Veenstra · @gertjanveenstra
122 followers · 75 posts · Server mastodon.nl
On bioRxiv:
Nucleosomal DNA pull down with TFs
#genomics #epigenomics #nucleosome #chromatin #epigenetic
#epigenetic #chromatin #nucleosome #epigenomics #genomics