FedSearch
nf-core · @nf_core
344 followers · 209 posts · Server mstdn.science
Open media

RT @Ali_F_Alhawaj
EXCITED about downloading ~1TB of WES fastq files from the sequencing facility @uclgenomics 🤩

Planning to use through Sarek from @nf_core for variant calling 🧬💻

#gatk #genomics #bioinformatics #phd #phdlife

Last updated 1 year ago
Original post

· @johanneskoester
140 followers · 32 posts · Server fosstodon.org

1.23 is released, with 27 updated wrappers and a new wrapper for "LeftAlignAndTrimVariants". snakemake-wrappers.readthedocs

#snakemake_wrappers #gatk

Last updated 2 years ago
Original post

Johannes Helmuth · @hoellenmotte
26 followers · 84 posts · Server mastodon.lol
Nature - Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment - Scientific Reports

, and are all almost en par - Good news for streamlined diagnostics.

nature.com/articles/s41598-022

#gatk #dragen #deepvariant

Last updated 2 years ago
Original post

Johannes Helmuth · @hoellenmotte
33 followers · 148 posts · Server mastodon.lol
Nature - Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment - Scientific Reports

, and are all almost en par - Good news for streamlined diagnostics.

nature.com/articles/s41598-022

#gatk #dragen #deepvariant

Last updated 2 years ago
Original post