Genetics Ecology and Evolution · @GenEcoEvo
142 followers · 39 posts · Server ecoevo.social
Do you know that your favorite dried sausage harbors a lot of interesting #genomic stuff?
The footprints of #domestication in dry-cured meat fungi (including the aptly named Penicillium salami)
In final form at #Evolutionary #Applications
https://doi.org/10.1111/eva.13591
Very much related with #CheesyFungi, here a quick and visual reminder
https://www.youtube.com/watch?v=LRGcIguvqCs
#genomic #domestication #Evolutionary #applications #cheesyfungi
Giuseppe Michieli · @GMIK69
104 followers · 2119 posts · Server mstdn.science''HPAI A/ #H5N1 viruses (lineage 2.3.4.4b) are rapidly invading the #Americas, threatening #wildlife, #poultry, and potentially evolving into next global #pandemic. In November 2022 HPAI arrived in #Peru, triggering massive #pelican and sea lion die-offs. We report #genomic characterization of HPAI/H5N1 in five species of marine mammals and seabirds (dolphins, sea lions, sanderlings, pelicans and cormorants).''
#h5n1 #Americas #wildlife #poultry #pandemic #peru #pelican #genomic
Stephen Matheson🌵🌲 · @sfmatheson
710 followers · 679 posts · Server fediscience.orgJulia Salzman from Stanford
http://salzmanlab.stanford.edu/
now explaining
SPLASH: Statistically Primary aLignment Agnostic Sequence Homing
We want to rapidly survey large #genomic areas, for regulatory sites, #splicing, etc. How do we look at sequencing data today? Through a lens of alignment with reference genomes. This can fail (e.g. cancer cells with shattered genomes, #V(D)J #recombination in immune cells)
Her metaphor: we need ground penetrating radar for #genomics
1/2
#cssinglecells23 #genomics #Recombination #v #splicing #genomic
Giuseppe Michieli · @GMIK69
100 followers · 1902 posts · Server mstdn.scienceThe #genomic #landscape of swine #influenza A viruses in Southeast #Asia, PNAS: https://doi.org/10.1073/pnas.2301926120 #pigs #reassortant #epizootic #enzootic #panzootic #pandemic #research
#genomic #landscape #influenza #asia #pigs #reassortant #epizootic #enzootic #panzootic #pandemic #research
CellBioNews · @cellbionews
104 followers · 1804 posts · Server scientificnetwork.deBehind the rind: New #genomic insights into #watermelon #evolution, quality, and resilience.
https://phys.org/news/2023-08-rind-genomic-insights-watermelon-evolution.html
#genomic #watermelon #evolution #super_pangenome #agriculture
CellBioNews · @cellbionews
103 followers · 1796 posts · Server scientificnetwork.de#Warming #oceans and rivers cause #genomic changes in #fish, scientists find.
#climatechange #embryogenesis #transcriptomes
https://phys.org/news/2023-08-oceans-rivers-genomic-fish-scientists.html
#warming #oceans #genomic #fish #climatechange #embryogenesis #transcriptomes
Auscandoc · @auscandoc
1025 followers · 9335 posts · Server med-mastodon.com“This week the #CDC #genomic surveillance showed continued rise of the #EG.5.1 #variant with near doubling over the past couple of weeks, showing significant growth advantage compared to its prevailing #XBB variant precursors (such as XBB.1.5, XBB.1.16, XBB.1.9 #COVID #SARSCoV2 https://mstdn.social/@erictopol/110844536476608635
#CDC #genomic #eg #variant #xbb #COVID #SarsCoV2
Pablo Cárdenas R. · @pcr_guy
250 followers · 134 posts · Server mstdn.scienceEvoluncheons weekly meetup (Week of 7 Aug 2023)
Some picks on papers and resources in #evolution-ey stuff I like from the past couple of weeks! Big backlog here since I was at a conference. #Systemsbiology, #genomic #epidemiology, #immunity, #cancer—something for everyone here: 1/n
#evolution #systemsbiology #genomic #epidemiology #immunity #cancer
Sandra Laurentino · @SandraLaurentino
61 followers · 143 posts · Server qoto.org
Our new work was just published on BMC Bioinformatics
OGRE: calculate, visualize, and analyze overlap between genomic input regions and public annotations
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05422-w
OGRE is a #bioinformatics tool that calculates the overlap between a set of genes or regions (e.g. coming from RNA-seq) and publically available #genomic annotations (e.g. TFBSs). It was developed to be easy to use and with scientists without computational training in mind.
It's available on @bioconductor https://bioconductor.org/packages/devel/bioc/html/OGRE.html and on
@GitHub https://github.com/svenbioinf/OGRE
Giuseppe Michieli · @GMIK69
86 followers · 1733 posts · Server mstdn.science#Epidemiology of #HFMD and #genomic #surveillance of #coxsackievirus A10 circulating in #Zhejiang Province, #China during 2017 to 2022, J Clin Virol.: https://doi.org/10.1016/j.jcv.2023.105552 #enterovirus #HEV #vaccines #research #science #medicine
#epidemiology #hfmd #genomic #surveillance #coxsackievirus #zhejiang #china #enterovirus #hev #vaccines #research #Science #medicine
eLife · @eLife
4510 followers · 352 posts · Server fediscience.org
#Genomic studies of #extinct butterflies could help researchers identify other #insect species that are in decline. #ReviewedPreprint #Genomics https://elifesciences.org/reviewed-preprints/87928?utm_source=mastodon&utm_medium=social&utm_campaign=organic
#genomics #reviewedpreprint #insect #extinct #genomic
Warwick Uni SBIDER · @WarwickSBIDER
88 followers · 97 posts · Server fediscience.org1/ 🎙️ Podcast alert🎙️
Listen to our latest episode of the SBIDER Presents Podcast!
@EdMHill & Laura Guzman Rincon speak with @WarwickSBIDER group member Xavier Didelot on how #modelling and #genomic data can help inform antibiotic use to mitigate the spread of #AMR.
🔗: https://www.podbean.com/eas/pb-qtkja-145cdc1
#podcast #science #research #academia #SciComm #epidemiology #EpiVerse #genomics @academicchatter
#genomics #epiverse #epidemiology #scicomm #academia #research #science #podcast #AMR #genomic #modelling
Giuseppe Michieli · @GMIK69
83 followers · 1671 posts · Server mstdn.science''#Genomic analysis of 19 viruses sequenced from this #outbreak showed that they all belonged to the #H5 #clade 2.3.4.4b and were highly related to each other. Also, the viruses are similar to influenza A(#H5N1) clade 2.3.4.4b viruses which have been circulating in wild birds and which caused outbreaks in poultry recently in Poland. ''
#genomic #outbreak #h5 #clade #h5n1
CellBioNews · @cellbionews
69 followers · 1552 posts · Server scientificnetwork.deLargest-ever #genomic sequencing study of #canine #cancers reveals striking similarities to human cancers.
https://phys.org/news/2023-07-largest-ever-genomic-sequencing-canine-cancers.html
CellBioNews · @cellbionews
69 followers · 1528 posts · Server scientificnetwork.deScientists reveal #genomic distribution and #evolutionary patterns of #6mA modifications in #plants.
https://phys.org/news/2023-07-scientists-reveal-genomic-evolutionary-patterns.html
#genomic #Evolutionary #6ma #plants #methylation
JIPB · @JIPB
42 followers · 180 posts · Server mstdn.science
🔓⬇️#OpenAccess #PlantScience for your weekend!
#Genomic, #transcriptomic, and #metabolomic analysis of Oldenlandia corymbosa reveals the #biosynthesis and mode of action of anti-#cancer metabolites.
https://doi.org/10.1111/jipb.13469
@wileyplantsci
#JIPB #PlantSci #medicine #PlantScience
#openaccess #plantscience #genomic #transcriptomic #metabolomic #biosynthesis #cancer #JIPB #plantsci #medicine
CellBioNews · @cellbionews
61 followers · 1463 posts · Server scientificnetwork.deNew #genomic mechanisms of #fish #survival in the extreme #cold revealed.
https://phys.org/news/2023-06-genomic-mechanisms-fish-survival-extreme.html
#genomic #fish #survival #cold #evolution
Benjamin Carr, Ph.D. 👨🏻💻🧬 · @BenjaminHCCarr
804 followers · 2030 posts · Server hachyderm.io#Overfishing linked to rapid #evolution of #codfish
A report by scientists offers the first #genomic evidence that #Atlantic #cod evolved new traits over only decades during a period of overfishing—evolutionary changes that scientists formerly believed could take millions of years. https://phys.org/news/2023-05-overfishing-linked-rapid-evolution-codfish.html
#overfishing #evolution #codfish #genomic #atlantic #cod
Giuseppe Michieli · @GMIK69
68 followers · 1478 posts · Server mstdn.scienceParys A, Vereecke N, Vandoorn E, Theuns S, Van Reeth K. #Surveillance and #genomic characterization of #influenza A and D viruses in swine, #Belgium and the Netherlands, 2019–2021. Emerg Infect Dis. 2023 Jul [date cited]. https://doi.org/10.3201/eid2907.221499
#surveillance #genomic #influenza #belgium
CellBioNews · @cellbionews
58 followers · 1409 posts · Server scientificnetwork.deStudy provides #genomic resources to help boost #climate resilience of #fisheries.
#aquaculture #climatechange #osmoregulation
https://phys.org/news/2023-06-genomic-resources-boost-climate-resilience.html
#genomic #Climate #fisheries #aquaculture #climatechange #osmoregulation