#TeamMassSpec
I use #FragPipe developed by the Nesvizhskii lab for #proteomics data analysis. The latest update has a link to analyze the results using a version of #LFQAnlyst compatible with FragPipe output called #FragPipe-Analyst.
http://fragpipe-analyst.nesvilab.org/
This is a powerful R statistical analysis workflow that anybody can quickly use to get descriptive and differential abundance results directly from the FragPipe output. Thanks @nesvilab