RT @vizgen_inc
🇫🇷We're excited to sponor Applications of Single Cell Genomics Across Development & Immune Diseases at @NantesUniv! Join us April 4th at 15:30 GMT+1 to discover #MERSCOPE & #MERFISH for high-quality #SpatialTranscriptomics.

Check out more Vizgen events: https://hubs.ly/Q01J6K2S0

RT @vizgen_inc
🧠Looking for some brainy fun this week? Check out the original #MERSCOPE #MERFISH Mouse Brain Receptor Map!🐭

-483 gene panel
-734,969 total cells imaged
-554,802,908 total transcripts detected
-GPCRs & RTKs

Explore today: https://hubs.ly/Q01GFS8T0🎣

#BrainWeek #NeuroTwitter

RT @vizgen_inc
📣We are excited to share a preprint from our brilliant scientific co-founder Dr. Xiaowei Zhuang's lab at @Harvard!

Meng Zhang's amazing team used #MERFISH to create a #CellAtlas of the whole mouse brain- https://hubs.ly/Q01FWLM10
🐭🧠👩‍🔬

#IWD2023 #EmbraceEquity #WomenInScience

RT @vizgen_inc
#SpatialMultiomic measurements that combine transcript + protein detection + location are critical in understanding complex #biology.

This #MERSCOPE masterpiece shows the co-detection of 5 proteins + 468 #MERFISH gene panel on mouse brain.

Happy National Protein Day!
🐭🧠💪

COMMOT, COMMunication analysis by Optimal Transport, a versatile tool infer cell–cell communication in #SpatialTranscriptomics 🤠

Compatible with #MERFISH #Visium seqFISH+ #STARmap

vs #CellChat #Giotto #CellPhoneDBv3

Dr. Qing Nie lab Nature Methods 2023
https://www.nature.com/articles/s41592-022-01728-4

If you work on the spatial transcriptome data. Our tool may help you https://monkeybread.readthedocs.io/en/latest/ #merfish #spatial

RT @vizgen_inc@twitter.com

New #MERFISH publication alert! Dr. Xiaowei Zhuang's @Harvard@twitter.com research team developed #EpigenomicMERFISH! Check out the open access publication available from @CellCellPress@twitter.com: https://hubs.ly/Q01v3jSG0

#Fascinating #Epigenomics #MERFISH #Brilliant

🐦🔗: https://twitter.com/vizgen_inc/status/1600135473770496000

Joint Sparse method for Imaging Transcriptomics (JSIT) for decoding imaging spatial transcriptomics data such as MERFISH. Better performance than the original pipeline (MERlin) according to the authors. #SpatialTranscriptomics #matlab #merfish #bioinformatics #tools
https://www.biorxiv.org/content/10.1101/2022.11.22.517523v1.full

Joint Sparse method for Imaging Transcriptomics (JSIT) for decoding imaging spatial transcriptomics such as MERFISH. Better performance than the original pipeline (MERlin) according to the authors. #SpatialTranscriptomics #matlab #merfish #bioinformatics #tools
https://www.biorxiv.org/content/10.1101/2022.11.22.517523v1.full

RT @vizgen_inc@twitter.com

#30DayMapChallenge Day 27- #Heatmap
#MERFISH mouse brain map. The interactive heatmap enables the visualization of gene expression across Leiden clusters and single-cells!
https://hubs.ly/H0_V5260
#observable_jupyter #deckgl #spatialtranscriptomics @googlecolab@twitter.com @observablehq@twitter.com

🐦🔗: https://twitter.com/vizgen_inc/status/1464626128484806663