💻 AMDirT facilitates automated metadata curation and data validation, as well as rapid data filtering and downloading. Together, both standardised metadata and tooling will help towards easier incorporation and reuse of public #ancient #metagenomic #datasets into future analyses. 📊

Through a series of community-based hackathon events, AncientMetagenomeDir was updated to provide standardised library-level metadata of existing and new ancient #metagenomic samples. 🧬 :agar_plate:

🚨#spaamtisch attendees
📈Our first 6 months of
@spaam_community #spaamtisch seminars and regular's table meetings are over. Before starting a new chapter, let us know what you think about the past events by filling this survey form by the 31/08/23

https://docs.google.com/forms/d/e/1FAIpQLSc8NylFBSchrS4KErAJDKvRZTxkLooM0YB-zuSf5yjRvWYtyA/viewform

#aDNA #seminar #ancientDNA #metagenomic #microbiome #bioinformatics #genomics #archaeology #ancient #genetics #data

👇🚨#spaamtisch meeting videos from past seminars are now available on our community YouTube channel! If you missed
Maxime Borry and @jfy133 seminar on AMDirT, a brand new tool for browsing and filtering ancientmetagenomeDir, now you can watch it here
https://youtu.be/evPKxkH4FzI

#aDNA #ancientDNA #bioinformatics #metadata #metagenomic #data #tools #community

#Microbe-stuffed #soil crusts menaced by #climate_change.

#microbiome #cryptobiotic_crust #BONCAT #metagenomic

https://phys.org/news/2023-08-microbe-stuffed-soil-crusts-menaced-climate.html

RT @hostmicrobe
Interested in finding fungi, protists or worms in your #metagenomic data 🔍🦠🪱? Look no further. Check out our new article now out in @MicrobiomeJ! Round up those microbial eukaryote sequences in your data using our new software, CORRAL 🤠. 🧵 (1/4)

https://doi.org/10.1186/s40168-023-01505-1

One common problem that can hinder the use and reuse of microbial and #metagenomic #sequences is in making sure that the quality and purpose of the sequence sets can be readily understood. Were these high #quality reference? Were they negative #controls? Are there known issues?

Carbon acquisition ecological strategies to connect soil microbial biodiversity and carbon cycling -#metagenomic

https://www.sciencedirect.com/science/article/abs/pii/S0038071722003509

What do you most want to understand about how collective features emerge in microbial communities?

#metagenomic #microbiome

https://www.cell.com/cell-systems/fulltext/S2405-4712(23)00027-3#%20

Pitfalls of genotyping microbial communities with rapidly growing genome collections: Cell Systems
#metagenomic
https://www.cell.com/cell-systems/fulltext/S2405-4712(22)00495-1#%20

“Bias in #metagenomic functional inference”

https://www.nature.com/articles/s43705-023-00221-z

Happy to have some of my #metagenomic work from my PhD reach @MicrobioSoc@twitter.com journals: https://tinyurl.com/strainsfromsoap
For those of you who don't know, before having a stab at the enteric world, I was very interested in soap 🧼 (1/5)

#introduction
Hello Everyone, i am a #PhD Candidate interested in the #microbiome and #computationalBiology. My current project is about finding #biomarkers in the human microbiome for clinical applications using mostly #metagenomic in combination with #multi-omics, #bioinformatics and #machinelearning in close collaboration with clinicians.

I am also interested in taking about #climatecrisis, #music, #cats and #phdlife and looking forward to awesome #scienceCommunication here.

#ISMB2022, here we come!

Drop by for our #metagenomic talks & posters.
@MCB_UJ