Time-resolved analysis of microbial mats - using metatranscriptomics!

Amanda Shelton from Carnegie at #JGI2023

#jgi @LBNLBioSci #microbiology #metagenomics #metatranscriptomics

👨‍🏫 We (the @spaam_community ) run a yearly summer school on ancient (microbial) #metagenomics, with all material open access: walkthrough, slide, video Form, and coming soon even a text book!

See spaam website > projects for more details!

Thanks to Werner Siemens-Stiftung and deNBI cloud for 💶 and 🖥️ support!

A group photo from the SPAAM Summer School 2023
🎉🎉

#ancientdna #palaeogenomics #metagenomics #microbiomes #sedadna #bioinformatics #genetics #genomics #archaeology #archaeogenetics

A genome catalogue of lake bacterial diversity and its drivers at continental scale

https://www.nature.com/articles/s41564-023-01435-6

#metagenomics #lakes #freshwater #microbiology

Microbial Communities in Gynecological Cancers and Their Association with Tumor Somatic Variation. https://doi.org/10.3390/cancers15133316 #MicrobialCommunities #Metagenomics #HighGradeSerousOvarianCancer #EndometrioidEndometrialCancer #Bacterial

Hi! I recently migrated here and reposting my #introduction

I'm a researcher working on statistical modelling and developing software for analysing #metagenomics and #pathogen #genomics data. I also like tinkering with data compression and writing wrapper libraries for that.

Hi! I recently migrated here and reposting my introduction.

I'm a researcher working on statistical modelling and developing software for analysing #metagenomics and #pathogen #genomics data. I also like tinkering with data compression and writing wrapper libraries for that.

🚨 I'm happy to announce on behalf of the taxprofiler team a small new tool for #metagenomics 🚨|

Do you ever have to perform taxonomic classification or profiling with multiple tools, and then get frustrated trying to compare the output between them as they all have wierd and wonderful non-standard formats that are not easily 'mergable'?

If yes - you might be interested in TAXPASTA, published yesterday in @joss@foss.fosstodon.org!

Read the (very short!) publication below 👇

https://joss.theoj.org/papers/10.21105/joss.05627

📢 New release of AncientMetagenomeDir (v23.06: Aachen Cathedral) by the SPAAM Community!

https://github.com/SPAAM-community/AncientMetagenomeDir/releases/tag/v23.06.0

💀 #AncientMetagenomeDir is a community curated resource of standardised lists of #metadata of >2000 shotgun-sequenced #AncientMetagenome or ancient microbial genome-level enriched samples and >5000 libraries.

Release stats in the thread below 👇

#AncientDNA #palaeogenomics #aDNA #SPAAM #metagenomics

#ASMicrobe is almost here! Meet with Computomics at ASM Microbe in Houston, Texas from June 15-19. Seize this chance to chat with our expert for tailored metagenomics solutions Sascha Patz 👉 https://tinyurl.com/px9k37f5
Sascha will be happy to meet with you 🤗 See you in Houston!
#Metagenomics #MEGAN #MORPHEUS

Meet Sascha Patz at the #Microbiome Forum in Rotterdam! If you’re interested in interactive analysis and visualization of microbiome dynamics, feel free to get in touch 👉 sascha.patz@computomics.com 🤗https://bit.ly/3HCxPTF
#metagenomics #visualization #MORPHEUS

Question for #metagenomics folks: what statistic do you use to estimate the probability that two sequence collections are drawn from the same source? Can you point me to a computationally efficient implementation? Thanks!

Attending the #MicrobiomeForum? Don't miss our talk “Online Discovery of Skin Microbiome Dynamics using MORPHEUS” - our local #Metagenomics Platform driving Interactive #Analysis and #Visualization of #Microbiome Dynamics on the web. Details 👉 https://bit.ly/3HCxPTF #MORPHEUS

As our Environmental #Metagenomics course draws to a close, we're proud to see our attendees equipped with new knowledge & skills to conquer data analysis challenges🧬

Big thanks to our incredible instructors @AnttiKarkman
& @IgorPessi for this great week!
#Rstats #Bioinformatics

🥁There are still a few seats available for some of our courses in May and June!
#Python #Rstats #singlecell #RNAseq #transposableElements #Metagenomics #GLMs #rspatial #Genomics #DataScience

RT @RestREco1
Join the RestREco Team!

We're hiring a #Postdoc/RA at @CranfieldUni working on the effects of #restoration on #soilmicrobial #metagenomics :
https://jobs.cranfield.ac.uk/vacancy/research-assistant-or-research-fellow-in-soil-microbial-metagenomics-522911.html

Please share far & wide with anyone you think might be interested 🌳🌿🪱🦠🔬

The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice at Nature Microbiology

Faecal metagenomics & serum metabolomics (77 cases, 70 controls) + FMT to GF mice to show casual relationship. #science #research #microbiome #metagenomics

https://www.nature.com/articles/s41564-023-01355-5

New edition of the #EnvironmentalMetagenomics course w/ @AnttiKarkman
& @IgorPessi is underway! Ready for a week-long journey into cutting-edge bioinformatic approaches for analysing metagenomic data.

#Genomics #Metagenomics #Bioinformatics

Join us for the last chance to enroll in our one-week course on Environmental #Metagenomics!

Learn state-of-the-art bioinformatic approaches to analyze metagenomic data using both short- and long-read sequencing platforms.

Don't miss out on this exciting opportunity!
https://www.physalia-courses.org/courses-workshops/environmental-metagenomics/

The preprint of Phables is up on biorxiv! Phables can resolve high-quality bacteriophage genomes in metagenomic data using assembly graphs.

Preprint: https://www.biorxiv.org/content/10.1101/2023.04.04.535632v1
GitHub: https://github.com/Vini2/phables

@BeardyMcJohnFace @npbhavya @griggo_grig @GB13Faithless @AbbeyHutton @linsalrob

#bacteriophages #phages #metagenomics #bioinformatics #software