Time-resolved analysis of microbial mats - using metatranscriptomics!
Amanda Shelton from Carnegie at #JGI2023
#jgi @LBNLBioSci #microbiology #metagenomics #metatranscriptomics
#jgi2023 #JGI #microbiology #metagenomics #metatranscriptomics
"**MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities"**
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01562-6
#RNAseq #metatranscriptomics #microbes #bioinformatics #pipeline
#rnaseq #metatranscriptomics #microbes #bioinformatics #pipeline
Today is the LAST DAY to apply for our joint CBW-IMPACTT Microbiome Analysis Workshop at the early-bird rate! July 5-7, 2023 at the University of Calgary. Apply here: https://bioinformatics.ca/workshops-all/2023-cbw-impactt-microbiome-analysis/
#bioinformatics #workshop #16S #18S #sequencing #shotgunsequencing #metagenomics #genomics #transcriptomics #metatranscriptomics #longread #markergene #functionalannotation #tutorial #statistics #biostatistics #microbiome #microbiota #microbialecology #diversity #betadiversity #differentialabundance
#bioinformatics #workshop #16s #18S #sequencing #shotgunsequencing #Metagenomics #genomics #Transcriptomics #metatranscriptomics #longread #markergene #functionalannotation #Tutorial #statistics #biostatistics #microbiome #microbiota #microbialecology #diversity #betadiversity #differentialabundance
Do you want to learn #Metagenomics #Metatranscriptomics #Bioinformatics and #MultiOmics?
Join us in June for this amazing course with Physalia Courses!
https://physalia-courses.org/courses-workshops/course33/
There are still a few seats available!
#Metagenomics #metatranscriptomics #bioinformatics #multiomics
Soil restoration signs from microbial activity through crop-residue incorporation in agrocultural soils.
#SoilMicrobes
#CarbonSequestration
#MetaTranscriptomics
https://www.sciencedirect.com/science/article/pii/S0038071723000561
#SoilMicrobes #carbonsequestration #metatranscriptomics
Soil restoration signs from microbial activity through crop-residue incorporation in agrocultural soils.
#SoilMicrobes
#CarbonSequestration
#MetaTranscriptomics
https://www.sciencedirect.com/science/article/abs/pii/S0038071723000561
#SoilMicrobes #carbonsequestration #metatranscriptomics
Thank you to everyone who attended (and taught at) our Bioinformatics Workshop earlier this week at McGill University! Learn more and sign up for updates about future workshops here: https://www.impactt-microbiome.ca/bioinformatics-workshop/
#bioinformatics #workshop #QIIME2 #metagenomics #metatranscriptomics #transcriptomics #functional #analysis #statistics #microbiome #data #datascience
#bioinformatics #workshop #QIIME2 #metagenomics #metatranscriptomics #transcriptomics #functional #analysis #statistics #microbiome #data #datascience
Here is my #introduction - I am a #microbial #ecologist with Eawag: #Swiss Federal Institute of #Aquatic #Science and Technology in the Surface Waters department. Interested in the role of #microbes in #biogeochemistry of #lake, #river, #sediment & #wastewater. Also #research on #AntibioticResistance in the #environment.
We use #metagenomics, #metatranscriptomics #qPCR and good old-fashioned #microbiology.
#MicrobialEcology
#EnvironmentalMicrobiology
#AMR #Antibiotic
#methane #nitrogen
#introduction #microbial #ecologist #Swiss #aquatic #Science #microbes #biogeochemistry #lake #river #sediment #wastewater #research #antibioticresistance #environment #Metagenomics #metatranscriptomics #qPCR #microbiology #microbialecology #environmentalmicrobiology #AMR #antibiotic #methane #nitrogen
A few more hashtags for good measure:
#WomenInScience #WomenInSTEM #momademia #bacteria #metatranscriptomics #MicrobialEcology
#womeninscience #womeninSTEM #momademia #bacteria #metatranscriptomics #microbialecology