Discover remarkable datasets from the scientific community in our gallery!

https://zarr.webknossos.org/

All datasets are available as OME-Zarr, now. Contact us if you would like to publish your dataset here. @zarr #OMEZarr

... and special apologies for the lack of open access.

For the next 50 days (until 2023-04-28) you can access the chapter on using #OMEZarr in #VolumeEM under:

https://authors.elsevier.com/a/1gjIc,25QIopF6

RT @notjustmoore
"Toward #scalable reuse of #vEM data: #OMEZarr to the rescue" just hit the shelves!📚

https://doi.org/10.1016/bs.mcb.2023.01.016

Special thanks to co-authors @normanrz & @BogovicJohn, co-artist @DrHenningFalk, and volume (ha!) editors @EM_STP @KedarNarayan2 & @PaulVerkade

👏👏👏#VolumeEM @VolumeEM1
---
RT @notjustmoore
"Toward #scalable reuse of #vEM data: #OMEZarr to the rescue" just hit the shelves!📚

https://doi.org/10.1016/bs.mcb.2023.01.016

Special thanks to co-authors @normanrz & @BogovicJohn, co-artist @DrHenningFalk, and volume (ha!) editors @EM_STP @KedarNarayan2 & @PaulVerkade
https://twitter.com/notjustmoore/status/1633865042025127937

"Toward #scalable reuse of #vEM data: #OMEZarr to the rescue" just hit the shelves!📚

https://doi.org/10.1016/bs.mcb.2023.01.016

Special thanks to co-authors @normanrz & @BogovicJohn@twitter.com, co-artist @DrHenningFalk@twitter.com, and volume (ha!) editors Lucy Collinson, Kedar Narayan, & Paul Verkade

Not to mention @ome + @zarr

Love to see @webknossos in such great company! #OMEZarr
---
RT @notjustmoore
#OMEZARR co-authors 2/3

@markkitti, Gabor, Aybüke, Albane, @BioinfoTongLI, Prisca, Melissa, Dominik, @joel_luethi, @JMaitinShepard, @trevmanz, @thewtex, Khaled, @will_j_moore, Bugra, @cppape, Lucas, Martin, @pietzscht, @preibischs, @normanrz, @DavidRStirling, ...
https://twitter.com/notjustmoore/status/1628096218340421634

One thing that shows just how fast the community is moving: I only learned about #OMEZarr a bit more than a year ago with the Nature methods paper on #OMENGFF, which convinced me that this was the way forward: https://www.nature.com/articles/s41592-021-01326-w
(2/5)

Super happy that the preprint for the #OMEZarr paper is out now! If you want to know where bioimage analysis is going: I think this will be the direction! Standardization & open source for the win!

Find the #bioRxiv preprint here: https://www.biorxiv.org/content/10.1101/2023.02.17.528834v1

And Josh's main thread about it here: https://fediscience.org/@joshmoore/109904124384328635

RT @notjustmoore
Latest report from the #OMENGFF #Community describing #OMEZARR, a #CloudOptimized #BioImaging #DataFormat, is out now on #bioRxiv!

If you have issues with big, slow, or otherwise unwieldy imaging data, reach out or take a look for a #FAIR-er option.

https://www.biorxiv.org/content/10.1101/2023.02.17.528834v1

RT @notjustmoore
Latest report from the #OMENGFF #Community describing #OMEZARR, a #CloudOptimized #BioImaging #DataFormat, is out now on #bioRxiv!

If you have issues with big, slow, or otherwise unwieldy imaging data, reach out or take a look for a #FAIR-er option.

https://www.biorxiv.org/content/10.1101/2023.02.17.528834v1

To that end, thanks to all the #OMEZARR co-authors, in no particular order as I collect federated handles:

@joel_luethi
@markkitti
@EvaMaxfield
@mkeller7
@willmoore
@preibischs
@normanrz
@kevinyamauchi
@herrsaalfeld
@thewtex

The paper brings together many of those who made #OMEZARR possible: by defining the format, building #OSS software, & adopting the format in their data resources. This both shows the options that are available for users today but hopefully also spurns more and exciting growth. 🤝

Latest report from the #OMENGFF #Community describing #OMEZARR, a #CloudOptimized #BioImaging #DataFormat, is out now on #bioRxiv!

If you are having trouble with big, slow, or otherwise unwieldy imaging data, reach out or take a look for a #FAIR-er option.

https://www.biorxiv.org/content/10.1101/2023.02.17.528834v1

What could be a better end of the year present than a poster that brings together #NASA, #openmicroscopy, and #zarr? 🚀🦠🔬🖥️🎁

Kudos to https://twitter.com/ryantscott and team for taking us where no #OMEZARR has been before...

#OpenScience #DataRepository

https://agu2022fallmeeting-agu.ipostersessions.com/default.aspx?s=C6-2E-73-3A-75-35-51-8D-EA-94-0A-70-87-CB-6A-81