Kate Michie · @kmichie
6 followers · 12 posts · Server mstdn.scienceDoes anyone have any experience with running #alphafold #openfold on ARM-based GPU? I’m interested to know if current DL code is moving in this direction… (secretly/desperately) hoping so. Any insight would be appreciated especially on new DL for docking, engineering etc #proteinstructure #structuralbiology
#AlphaFold #openfold #ProteinStructure #structuralbiology
MCDuncanLab · @MCDuncanLab
230 followers · 1422 posts · Server mstdn.socialOpenFold, a fast, memory-efficient, and trainable implementation of AlphaFold2.
https://www.biorxiv.org/content/10.1101/2022.11.20.517210v3
#Science #ProteinStructure #StructuralBiology #MachineLearning #AlphaFold #OpenFold
#openfold #alphafold #MachineLearning #structuralbiology #proteinstructure #Science
Vaclav Hanzl · @vaclavh
22 followers · 48 posts · Server sigmoid.socialReading #AlphaFold2 and #OMSF #OpenFold code is great but with #protein #molecules in your hands you feel it better. Designing the kit in #FreeCAD ensures you know bond lengths and angles etc. So I spent few days learning and printing. The kit is optimized for protein #folding, single bond rotates but can be fixed in #peptide bond, it keeps shape even before adding #hydrogen #bonds in #alphahelix (or pair #RNA bases by H-bond).
Print your #kit and enjoy #biochemistry!
https://www.printables.com/model/457984-molecules-for-protein-folding
#AlphaFold2 #omsf #openfold #protein #molecules #freecad #folding #peptide #hydrogen #bonds #alphahelix #RNA #kit #biochemistry
Reto Stamm · @retostamm
47 followers · 21 posts · Server genomic.social
Brendan Hayward · @bmjhayward
46 followers · 69 posts · Server fosstodon.org
Elisa Fadda-🔺 · @Elisa
443 followers · 887 posts · Server mastodon.world@xtaldave meanwhile, in the AlQuraishi lab... #OpenFold #NotaDullMoment #ProteinFolding #AlphaFold #structuralbiology
https://www.biorxiv.org/content/10.1101/2022.11.20.517210v1
#openfold #notadullmoment #ProteinFolding #AlphaFold #structuralbiology
Marc Robinson-Rechavi · @marcrr
443 followers · 289 posts · Server ecoevo.social@biorxivpreprint 👍 "we developed OpenFold, a trainable open-source implementation of AlphaFold2, and OpenProteinSet, a database of five million deep and diverse MSAs that removes one of the most significant computational barriers—millions of CPU-hours—to training new protein models at the scale of AlphaFold2" #OpenSource #OpenScience #MachineLearning #Bioinformatics #OpenFold #AlphaFold
#opensource #OpenScience #machinelearning #bioinformatics #openfold #AlphaFold