To go along with the #JBrowse2 tutorial at #PAG30 a few weeks ago, we also have three talks by JBrowse folks:

@rbuels gave an intro to JBrowse: https://youtu.be/oxdhe_ZLGYs

Colin Diesh gave an overview of JBrowse 2 features: https://youtu.be/jl0BzcBhGqk

Caroline Bridge talked about the JBrowse 2 plugin architecture: https://youtu.be/hJmV97odZ1w

The Arabidopsis Informatics workshop last week at #PAG30 featured two talks that were relevant to the A. thaliana genome reannotation project. Slide decks have been uploaded to http://tinyurl.com/Athalianav12. #ArabidopsisV12 #community

At #PAG30 earlier this month, we presented a hands on #JBrowse2 tutorial, where the attendees could log into a server, run through setting up a JBrowse 2 instance and added quite a lot of data, including #synteny and #structuralVariation. A video of that tutorial and accompanying updated tutorial to make it easier to do "on your own" are now available at YouTube: https://youtu.be/0MtYsAFEMXI and the tutorial page is at http://gmod.org/wiki/JBrowse2_Tutorial_PAG_2023

We were represented at #PAG30 in San Diego this week by Pamela Burger and team, talking introgressive hybridization in wild camels and the genetic differentiation between African and Asiatic cheetahs, and the role of conservation genomics in the protection of endangered species🐫

Thanks @yutang_mpb_eth, it was great and inspiring being @PAGmeeting with you and Marius.
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RT @yutang_mpb_eth
Finishing off #PAG30 with @RolandKoelliker excellent presentation on disease resistance in outbreeding forage crops! Very well done and many congratulations! @MolecPlantBreed
https://twitter.com/yutang_mpb_eth/status/1615798109875109888

RT @MuseumGenomics
Building on the wonderful keynote by @frozenzoo at #PAG30, we need to work towards cell isolation/preservation in #NaturalHistoryMuseums for applications in #MuseumGenomics and more! Would be great to learn of already successful efforts in this area, so please share.

RT @aubombarely
Alaina Shumate follows at the #Bioinformatics session at #PAG30 with LiftoffTools to compare genome annotations mapped between genome assemblies. Compare gene models is a more complex problem than just convert coordinates. Liftoff uses Minimap2 to map gene models.

RT @kstsosie
“As a scientist, I’m a fan of open data. But we are not yet ready for open data.” @YrachetaJM at #PAG30 giving a much-needed overview of how far legal protections need to advance in order to be equitable for Tribal Nations #PAG30 #DNA #OpenData

My 3rd (!!!) talk at #PAG30 is tomorrow at 2:40. I’ll present my unpublished work on the single-cell multiomic analysis of plant stress responses.

Shots fired
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RT @biodiversityge1
Overheard at a certain long read vendor’s booth at #PAG30 yesterday: “Illumina: making shitty genomes cheaper”. 🤣
https://twitter.com/biodiversityge1/status/1615447619886809088

RT @mike_schatz@twitter.com

Introducing Panagram by Katie Jenike et al: Alignment-free visualization & analysis of pan-genomes. 31 new genomes (@PacBio@twitter.com Sequel + Revio). Find core genes & haplotypes essential for flowering time, fruit shape & more in seconds! #PAG30 #Bioinformatics https://www.dropbox.com/s/g7snjgr8bs6c2uj/2023.01.17.Panagram.pdf?dl=0

🐦🔗: https://twitter.com/mike_schatz/status/1615440857980899328

Later today come to the Galaxy Workshop to hear about how we are supporting the VGP to study vertebrate evolution. Then get hands on training on how to assemble your own VGP quality genome! #PAG30

Workshop Details: https://plan.core-apps.com/pag_2023/event/3cee484866e6d00c5e492240c4d2d535

via @mike_schatz

RT @sedlazeck
Looking forward to the #Bioinformatics session #PAG30 today (10:30 Pacific A)! Come & join us. I will not talk about SV but something new &cool: Read2Tree. This will scale and simplify your comp. genomics workflow!!
Great work with @cdessimoz!
@BCM_HGSC @RiceCompSci @ddylus

RT @aubombarely
Tuesday at #PAG30 starts with the plenary presentation by Ian Godwin @Godwin_UQ on new breeding technologies for sorghums. He starts recommending The Drunken Botanist book. He points that sorghum is a more reliable crop than maize for Australian drought.

RT @gnomesnerd@twitter.com

Come see how we sequence biodiversity samples on @pacbio@twitter.com #Revio! Includes Revio data from @sangerinstitute@twitter.com @darwintreelife@twitter.com #PAG30

🐦🔗: https://twitter.com/gnomesnerd/status/1615123350275391488

RT @arthurkorte@twitter.com

@tair_news@twitter.com It will be not just of high quality, but of insane quality
For updates see
https://tinyurl.com/Athalianav12
#PAG30

🐦🔗: https://twitter.com/arthurkorte/status/1615113483162640384

Xiao Dong on a new #Arabidopsis genome assembly, Col-CC (community consensus of Col-0) #pag30 #highquality

Nowlan Freese can’t be here in person but pre-recorded a talk where he shares the many uses of IGB (integrated genome browser) #pag30

Nick Morffy from @LabStrader@twitter.com on #Arabidopsis activation domain identification #notEasy #PAG30

5.Col-CC: A New Community-Consensus Reference Genome of Arabidopsis thaliana (Xiao Dong) 6. Community Based Re-Annotation of the Arabidopsis Genome (Tanya Berardini) #PAG30