🥁Discover one of runners-up submissions to #CI2023 #Reproducibility Challenge

Authors approximate the computational reproduction of Environmental Data Science journal paper, Deep learning and variational inversion to quantify and attribute climate change

🚀 Launch:
https://edsbook.org/notebooks/gallery/9363cac-471a-469d-ad52-0514fd9b67f24/notebook

🧵(1/n)

"arXiv is a cancer that promotes the dissemination of junk 'science' in a format that is indistinguishable from real publications."

Riled by low-quality #preprints about #ChatGPT, @emilymbender pulls no punches. Thoughts, @academicchatter?

https://medium.com/@emilymenonbender/scholarship-should-be-open-inclusive-and-slow-15ab6ce1d74c

#OpenScience #arXiv #PeerReview #AcademicMastodon #AcademicChatter #AI #SlowScience #Reproducibility

Thank you for the terrific time at beautifully green #saarland university campus 🙏 We had a great time together at my #Reproducibility workshop yesterday. I learned a ton from this audience, it was great fun!

My favourite feedback from an audience member: #DataManagement is a journey and not a task. There is no wrong except not doing it at all. 👍

#OpenAccess #OpenScience #Saarbrücken

It’s that time of the year! 🙌🏻 Our course series on #OpenScience and #Reproducibility starts this week @unioslo and you can learn about:
✔️What open and reproducible research is
✔️How to preregister research studies
✔️How to make research workflows more reproducible
✔️How to publish openly
✔️How to make research more visible

It’s all online and if your institution doesn’t offer courses like that you are more than welcome to join! More info and registration: https://www.ub.uio.no/english/courses-events/courses/other/research-reproducibility/

In this course, you will gain the essential skills to ensure your R projects are not only efficient but also highly reproducible.

Learn how to organize your projects for seamless collaboration using tools like RMarkdown, renv, version control, and more.

If you've worked with R and want to minimize the pain of sharing and reproducing your work, this course with @eliocamp and @paocorrales is perfect for you:
#Rstats #Reproducibility #DataScience

📢 Excited to share the release of a new notebook submitted by the winning team of #CI2023 #Reproducibility Challenge!

Authors nicely demonstrates the computational reproduction of Environmental Data Science journal paper, A Sensitivity Analysis of a Regression Model of Ocean Temperature

👀 Explore it:
🔗 https://edsbook.org/notebooks/gallery/3286b92f-4fae-4cc6-a29e-e408bc844542/notebook

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Research integrity and reproducibility isn't just a STEM problem: "Reproducibility is when you use exactly the same evidence as another person and still get the same result — so it has a much, much lower bar for success, which is what makes the lack of it in history all the more worrying."

https://www.ageofinvention.xyz/p/age-of-invention-does-history-have

#Reproducibility #History

I've put together a Word document with all the fields to be filled out in the #OSF #preregistration template. Our lab uses this document to plan our preregistrations. This allows us to collaborate online, suggest changes, comment, and see version history (the OSF webpage does not like simultaneous users).

https://osf.io/ufzra

Feel free to use, share and feedback!

#preregistration
#reproducibility
#ReproducibiliTea #OpenScienceFramework #OpenScience

Official upload of the raw data to ENA’s SRA is still a couple of weeks away. In the meantime, we will update shortly our shared folder containing compressed raw reads: https://polybox.ethz.ch/index.php/s/NHFcTLX412pjgg9
…

#FAIR
#OpenScience
#reproducibility

🎉 Join us in ReproducibiliTea Basel next semester! This semester we continue online with a great program!

You can register and secure your place: https://eventbrite.com/o/unibasel-reproducibilitea-53629203863

#RTeaUnibasel
#OpenScience #Reproducibility #Replicability #ReproducibiliTea @mrifranz
https://osf.io/kp98v/?view_only=

This is how I usually set up the beginning of my #knitr / #quarto scripts to download data from #osf that I then use for analysis in the rest of the script.

This way I only need to share the script, and anybody who wants to #reproduce the results will always get the right datafile.

Let me know if there is a better way to do this!

#R #reproducibility
#ReproducibiliTea #OpenScienceFramework #OpenScience

It was such a pleasure to chat with the Danish #Reproducibility Network 🇩🇰 and other guests of the launch event today about barriers and enablers to #CommunityBuilding and share some lessons from building #NORRN 🇳🇴

Thanks so much for the invitation and welcome to the family of reproducible networks, #DKRN! 🎈

The full slide deck from my talk available here: https://osf.io/u9tw6

Hi #ScienceMastodon! Today's Research Highlight from JCS is a great example of how publishing studies that re-test old hypotheses with modern, more sensitive methods can address #reproducibility. Sabrina Holland and Gianluca Gallo from Temple University in Pennsylvania reexamine whether actin dynamics in growing axons are as much of a drain on neuronal energy homeostasis as previously reported.

Revisiting actin dynamics and energy homeostasis in growing neurons
https://journals.biologists.com/jcs/article/136/16/e136_e1602/325934/Revisiting-actin-dynamics-and-energy-homeostasis

Why should you bring #preprints into your journal club?

Here’s what #ECRs stand to gain by looking beyond published papers. 9/n
#AcademicChatter #Writing #Academia #PhDlife #PhD #ECR #SciComm #ScholComm #ResearchCulture #EDI #DEI #Preprint #Reproducibility #OpenAccess #OpenScience #OpenResearch

https://elifesciences.org/articles/38532?utm_source=mastodon&utm_medium=social&utm_campaign=organic_features

Trainees at different career stages proposed 7 actions that academic institutions and departments can take to improve their science training. 7/n
#AcademicChatter #Writing #Academia #PhDlife #PhD #ECR #SciComm #ScholComm #Reproducibility #ResearchCulture #EDI #DEI

https://elifesciences.org/articles/59806?utm_source=mastodon&utm_medium=social&utm_campaign=organic_features

Writing or reviewing a manuscript? Watch out for these ten common statistical mistakes ⬇️ 6/n
#AcademicChatter #Writing #Academia #PhDlife #PhD #ECR #SciComm #ScholComm #Reproducibility #DataScience #DataAnalysis #Data #Research #Statistics
https://elifesciences.org/articles/48175?utm_source=mastodon&utm_medium=social&utm_campaign=organic

New paper documenting #LTEE procedures

"Daily Transfers, Archiving Populations, and Measuring Fitness in the Long-Term Evolution Experiment with Escherichia coli"

Jeffrey E. Barrick, Zachary D. Blount, Devin M. Lake, Jack H. Dwenger, Jesus E. Chavarria-Palma, Minako Izutsu, Michael J. Wiser

https://www.jove.com/t/65342/daily-transfers-archiving-populations-measuring-fitness-long-term

#microbiology #evolution #experimental_evolution #science #reproducibility #genetics #genomics #bacteria

Research advice from #jazz—It ain't what you do, it's the way that you do it, that's what gets results! (Annie Ross)
#OpenScience #OpenSource #reproducibility
https://youtu.be/VyggLPYG8TM

"Although some commentators have pointed to the LK-99 saga as a model for reproducibility in science, others say that it involved an unusually swift resolution of a high-profile puzzle. “Often these things die this very slow death, where it’s just the rumours and nobody can reproduce it,” says Fuhrer."

https://www.nature.com/articles/d41586-023-02585-7

#Superconductor #LK99 #Reproducibility #Science

New study: "We find that scientists are overwhelmingly (95%) failing to publish their #code and that there has been no significant improvement over time, but we also find evidence that code sharing can considerably improve citations, particularly when combined with #OpenAccess publication."
https://www.researchsquare.com/article/rs-3222221/v1

#Citations #Impact #OACA #OpenSource #Reproducibility