Are there any Twitter refugees from out there? Follow us to get updates on our work and tips about , , , and more!

Boosts are appreciated so we can find all the folks who don't have the hashtag in their bios!

#universityofarizona #datascience #rstats #reproducibleresearch #UArizona

Last updated 1 year ago

Daniel Nüst · @nuest
249 followers · 20 posts · Server mstdn.social

Nice overview on by

f1000.com/resources-for-resear

Hope it inspires many of their authors and reviewers!

Don't want to give T&F your email? Download the PDF from f1000.com/wp-content/uploads/2

It is a bit short on the steps that publishers and journals could take though. If you are an editor with F1000, take a look at cdchck.science/

#codecheck #openscience #reproducibleresearch #F1000Research #reproducibility

Last updated 1 year ago

Yann Büchau :python: · @nobodyinperson
228 followers · 938 posts · Server fosstodon.org

Wow this is an awesome talk summarizing the motivation for with / . is also mentioned.

m.youtube.com/watch?v=SjjEDTcc

#reproducibleresearch #nix #guix #gitannex

Last updated 1 year ago

Bruno Rodrigues :rstats: :tux: · @brodriguesco
1066 followers · 1567 posts · Server fosstodon.org

I’m giving a presentation on how to make / reproducible using on 𝟭𝟵 𝗝𝘂𝗹𝘆 for , rb.gy/21920

it’s based on my book "Building reproducible analytical pipelines with (raps-with-r.dev/)

I’ll quickly walk you through how you can use {renv}, {targets} and to make your project reproducible!

#stats #datascience #rstats #reprot #docker #reproducibility #reproducibleresearch

Last updated 1 year ago

Yann Büchau :python: · @nobodyinperson
199 followers · 850 posts · Server fosstodon.org

Yesterday I submitted my first manuscript where I managed, synced and backup up all the data and files with :gitannex: and @datalad.

I use 's for across machines (data analysis and environments).

A very reassuring feeling being able to work on it anywhere and to know all files are securely backed up in a decentralized manner.

Also, reusing individual parts is possible. I'll use this workflow from now on 💪

#phdlife #gitannex #Apptainer #reproducibility #texlatex #DataLad #reproducibleresearch

Last updated 1 year ago

Nick Anderson · @nickanderson
153 followers · 1071 posts · Server fosstodon.org
Francesco Santini · @mrifranz
275 followers · 65 posts · Server mrtodon.net

How do you create a culture of ? Here are some personal considerations that I made at in an educational talk. I learned a lot in the last few years, and has become part of my life.

📽️ youtu.be/j7DDSW3lVCY

#reproducibleresearch #ismrm23 #openscience

Last updated 1 year ago

Real World Data Science · @rwdatasci
521 followers · 47 posts · Server fosstodon.org

The road to can be a tricky one to navigate, as Davit Svanidze discovered when he set about making his bachelor’s thesis reproducible. If you're thinking of walking a similar path, read Davit's case study.


realworlddatascience.net/case-

#reproducibleresearch #datascience #deeplearning

Last updated 1 year ago

Real World Data Science · @rwdatasci
521 followers · 46 posts · Server fosstodon.org

The road to can be a tricky one to navigate, as Davit Svanidze discovered when he set about making his bachelor’s thesis reproducible. If you are thinking of walking a similar path, start here: realworlddatascience.net/case-

In this case study, Svanidze and colleagues map their journey, beginning to end – signposting hazards to avoid and software, tools, and approaches to help you along the way.

#reproducibility #datascience #deeplearning #reproducibleresearch

Last updated 1 year ago

Cheng Soon Ong · @cheng
343 followers · 951 posts · Server masto.ai
OpenPlantPathology · @openplantpathology
68 followers · 56 posts · Server scicomm.xyz
Heidi Seibold · @HeidiSeibold
1532 followers · 463 posts · Server fosstodon.org
52°North · @52North
13 followers · 20 posts · Server fosstodon.org

Markus Konkol demonstrates a use case from the @MinkeProject on how the cooperation between the metrology and the oceanographic community can lead to an improved data reliability.

#egu23 #marineobservation #reproducibleresearch #citizenscience

Last updated 2 years ago

Eric Scott · @LeafyEricScott
286 followers · 790 posts · Server fosstodon.org

I'm very happy to announce that the @sortee paper I've been working on is finally published!

Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution

besjournals.onlinelibrary.wile

#ecology #evolution #github #reproducibleresearch #reproducibility #collaboration

Last updated 2 years ago

CodeRefinery · @coderefinery
167 followers · 65 posts · Server fosstodon.org

There is one more day of tomorrow! This is one of the best days, and as usual anyone can drop by and watch the :

- at 9:00 CET, which connects many things we have done before.
- And at ~11:00, "Modular code development type-along", where you'll see real steps you can take starting with data analysis turning into a tool using everything we have learned.

coderefinery.github.io/2023-03

#Coderefinery #livestream #softwaretesting #jupyter #reproducibleresearch #rseng #rse #openscience #scicomp

Last updated 2 years ago

CodeRefinery · @coderefinery
166 followers · 63 posts · Server fosstodon.org

is live for week 2. Last week we talked about version control () a lot, now we show got git can be used to make , , , and other things you need for . Yes, you can join for week 2 if you weren't here for week 1:

Livestream starting in 5 minutes:
twitch.tv/coderefinery
coderefinery.github.io/2023-03

#Coderefinery #git #reproducibleresearch #documentation #testing #openscience

Last updated 2 years ago

OpenPlantPathology · @openplantpathology
64 followers · 48 posts · Server scicomm.xyz

A new blog post is up! "How Much Do We (Plant Pathologists) Value Openness and Transparency?", @edelponte and @adamhsparks discuss their latest paper with @zacharyfoster et al. and what the implications are for plant pathology, why it may be so closed, and how we can be more open and reproducible in our research.

#openaccess #openresearch #fairdata #reproducibleresearch

Last updated 2 years ago

JuliaR · @jromanowska
33 followers · 90 posts · Server fosstodon.org

Everyone in Bergen and interested in reproducibility and/or R are welcome tomorrow: meetup.com/rladies-bergen/even - we have reserved 2 hours, but you can come and go whenever you want! Bring your ideas for next R-Ladies meetings or even your newest R-problem. All genders welcome!

#rstats #rladies #meetup #reproducibleresearch #womenintech

Last updated 2 years ago

OpenPlantPathology · @openplantpathology
54 followers · 44 posts · Server scicomm.xyz

Why don't we (scientists) share our data? In our recent paper, doi.org/10.1094/PHYTO-10-21-04, we found that plant pathologists don't commonly share data or code. Gomes et al. examine the reasons and what we can to do encourage this practice in their paper,
doi.org/10.1098/rspb.2022.1113.

#reproducibleresearch #openscience

Last updated 2 years ago

Aalto Scientific Computing · @SciCompAalto
115 followers · 38 posts · Server fosstodon.org

It's time! CodeRefinery is one our main courses for , covering all the skills such as (), , , , and more

Free to attend to anyone in the world: 21-23 & 28-30 March, EU mornings: coderefinery.github.io/2023-03
We recommend everyone attend this course at least once.

#Coderefinery #training #scientists #versioncontrol #git #documentation #reproducibleresearch #testing #rseng #hpc #scicomp #research #academicmastodon #PhDstudents #researchsoftware #openscience

Last updated 2 years ago