Are there any Twitter refugees from #UniversityOfArizona out there? Follow us to get updates on our work and tips about #DataScience, #rstats, #reproducibleresearch, and more!

Boosts are appreciated so we can find all the #UArizona folks who don't have the hashtag in their bios!

Nice overview on #Reproducibility by #F1000Research

https://f1000.com/resources-for-researchers/open-research/reproducibility/#formstack

Hope it inspires many of their authors and reviewers!

Don't want to give T&F your email? Download the PDF from https://f1000.com/wp-content/uploads/2023/06/F1000-058-%E2%80%93-Reproducibility-Guide_v1.pdf

It is a bit short on the steps that publishers and journals could take though. If you are an editor with F1000, take a look at http://cdchck.science/

#ReproducibleResearch #OpenScience #CODECHECK

Wow this is an awesome talk summarizing the motivation for #reproducibleResearch with #nix / #Guix. #gitAnnex is also mentioned.

https://m.youtube.com/watch?v=SjjEDTccpQA&pp=ygUZbml4IHJlcHJvZHVjaWJsZSByZXNlYXJjaA%3D%3D

I’m giving a presentation on how to make #stats / #datascience reproducible using #RStats on 𝟭𝟵 𝗝𝘂𝗹𝘆 for #ReproT, https://rb.gy/21920

it’s based on my book "Building reproducible analytical pipelines with #rstats (https://raps-with-r.dev/)

I’ll quickly walk you through how you can use {renv}, {targets} and #Docker to make your #RStats project reproducible!

#reproducibility #reproducibleresearch

Yesterday I submitted my first manuscript where I managed, synced and backup up all the data and files with :gitannex: #gitAnnex and @datalad.

I use #Apptainer's for #reproducibility across machines (data analysis and #TexLaTeX environments).

A very reassuring feeling being able to work on it anywhere and to know all files are securely backed up in a decentralized manner.

Also, reusing individual parts is possible. I'll use this workflow from now on 💪

#DataLad #reproducibleResearch #PhDLife

Org-mode as a lightweight Jupyter notebook

https://www.johndcook.com/blog/2022/08/02/org-babel-vs-jupyter/

#emacs #orgmode #jupyter #reproducibleresearch

How do you create a culture of #ReproducibleResearch? Here are some personal considerations that I made at #ISMRM23 in an educational talk. I learned a lot in the last few years, and #openscience has become part of my life.

📽️ https://youtu.be/j7DDSW3lVCY

The road to #ReproducibleResearch can be a tricky one to navigate, as Davit Svanidze discovered when he set about making his bachelor’s thesis reproducible. If you're thinking of walking a similar path, read Davit's case study.

#DataScience #DeepLearning
https://realworlddatascience.net/case-studies/posts/2023/06/15/road-to-reproducible-research.html

The road to #reproducibility can be a tricky one to navigate, as Davit Svanidze discovered when he set about making his bachelor’s thesis reproducible. If you are thinking of walking a similar path, start here: https://realworlddatascience.net/case-studies/posts/2023/06/15/road-to-reproducible-research.html

In this case study, Svanidze and colleagues map their journey, beginning to end – signposting hazards to avoid and software, tools, and approaches to help you along the way.

#DataScience #DeepLearning #ReproducibleResearch

How to do good experiments in #reinforcementlearning

#MachineLearning #ReproducibleResearch #BestPractice

https://arxiv.org/abs/2304.01315

New resource for statisticians interested in reproducible research! https://heidiseibold.ck.page/posts/big-announcement-course-on-reproducible-research-and-change-management #ReproducibleResearch from @HeidiSeibold

Big announcement: New course on #reproducibleresearch and #changemanagement 🧑‍💻

A joint project with Dr. Alexander Schacht.

https://heidiseibold.ck.page/posts/big-announcement-course-on-reproducible-research-and-change-management

Markus Konkol demonstrates a use case from the @MinkeProject on how the cooperation between the metrology and the oceanographic community can lead to an improved data reliability. #EGU23 #marineobservation #reproducibleresearch #citizenscience

I'm very happy to announce that the @sortee paper I've been working on is finally published!

Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution

https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.14108

#ecology #evolution #github #reproducibleResearch #reproducibility #collaboration

There is one more day of #CodeRefinery tomorrow! This is one of the best days, and as usual anyone can drop by and watch the #livestream:

- at 9:00 CET, #SoftwareTesting which connects many things we have done before.
- And at ~11:00, "Modular code development type-along", where you'll see real steps you can take starting with #Jupyter data analysis turning into a #ReproducibleResearch tool using everything we have learned.

https://coderefinery.github.io/2023-03-21-workshop/ #RSEng #RSE #OpenScience #SciComp

#CodeRefinery is live for week 2. Last week we talked about version control (#git) a lot, now we show got git can be used to make #ReproducibleResearch, #documentation, #testing, and other things you need for #OpenScience. Yes, you can join for week 2 if you weren't here for week 1:

Livestream starting in 5 minutes:
https://twitch.tv/coderefinery
https://coderefinery.github.io/2023-03-21-workshop/

A new blog post is up! "How Much Do We (Plant Pathologists) Value Openness and Transparency?", @edelponte and @adamhsparks discuss their latest paper with @zacharyfoster et al. and what the implications are for plant pathology, why it may be so closed, and how we can be more open and reproducible in our research. #ReproducibleResearch #FAIRData #OpenResearch #OpenAccess

Everyone in Bergen and interested in reproducibility and/or R are welcome tomorrow: https://www.meetup.com/rladies-bergen/events/291632166/ - we have reserved 2 hours, but you can come and go whenever you want! Bring your ideas for next R-Ladies meetings or even your newest R-problem. All genders welcome!

#rstats #rladies #meetup #reproducibleresearch #womenintech

Why don't we (scientists) share our data? In our recent paper, https://doi.org/10.1094/PHYTO-10-21-0430-PER, we found that plant pathologists don't commonly share data or code. Gomes et al. examine the reasons and what we can to do encourage this practice in their paper,
https://doi.org/10.1098/rspb.2022.1113. #OpenScience #ReproducibleResearch

It's #CodeRefinery time! CodeRefinery is one our main #training courses for #scientists, covering all the skills such as #VersionControl (#git), #documentation, #ReproducibleResearch, #testing, and more

Free to attend to anyone in the world: 21-23 & 28-30 March, EU mornings: https://coderefinery.github.io/2023-03-21-workshop/
We recommend everyone attend this course at least once.

#RSEng #HPC #SciComp #Research #AcademicMastodon #phdstudents #ResearchSoftware #OpenScience