Are there any Twitter refugees from #UniversityOfArizona out there? Follow us to get updates on our work and tips about #DataScience, #rstats, #reproducibleresearch, and more!
Boosts are appreciated so we can find all the #UArizona folks who don't have the hashtag in their bios!
#universityofarizona #datascience #rstats #reproducibleresearch #UArizona
Nice overview on #Reproducibility by #F1000Research
https://f1000.com/resources-for-researchers/open-research/reproducibility/#formstack
Hope it inspires many of their authors and reviewers!
Don't want to give T&F your email? Download the PDF from https://f1000.com/wp-content/uploads/2023/06/F1000-058-%E2%80%93-Reproducibility-Guide_v1.pdf
It is a bit short on the steps that publishers and journals could take though. If you are an editor with F1000, take a look at http://cdchck.science/
#codecheck #openscience #reproducibleresearch #F1000Research #reproducibility
Wow this is an awesome talk summarizing the motivation for #reproducibleResearch with #nix / #Guix. #gitAnnex is also mentioned.
https://m.youtube.com/watch?v=SjjEDTccpQA&pp=ygUZbml4IHJlcHJvZHVjaWJsZSByZXNlYXJjaA%3D%3D
#reproducibleresearch #nix #guix #gitannex
I’m giving a presentation on how to make #stats / #datascience reproducible using #RStats on 𝟭𝟵 𝗝𝘂𝗹𝘆 for #ReproT, https://rb.gy/21920
it’s based on my book "Building reproducible analytical pipelines with #rstats (https://raps-with-r.dev/)
I’ll quickly walk you through how you can use {renv}, {targets} and #Docker to make your #RStats project reproducible!
#stats #datascience #rstats #reprot #docker #reproducibility #reproducibleresearch
Yesterday I submitted my first manuscript where I managed, synced and backup up all the data and files with :gitannex: #gitAnnex and @datalad.
I use #Apptainer's for #reproducibility across machines (data analysis and #TexLaTeX environments).
A very reassuring feeling being able to work on it anywhere and to know all files are securely backed up in a decentralized manner.
Also, reusing individual parts is possible. I'll use this workflow from now on 💪
#phdlife #gitannex #Apptainer #reproducibility #texlatex #DataLad #reproducibleresearch
Org-mode as a lightweight Jupyter notebook
https://www.johndcook.com/blog/2022/08/02/org-babel-vs-jupyter/
#emacs #orgmode #jupyter #reproducibleresearch
How do you create a culture of #ReproducibleResearch? Here are some personal considerations that I made at #ISMRM23 in an educational talk. I learned a lot in the last few years, and #openscience has become part of my life.
#reproducibleresearch #ismrm23 #openscience
The road to #ReproducibleResearch can be a tricky one to navigate, as Davit Svanidze discovered when he set about making his bachelor’s thesis reproducible. If you're thinking of walking a similar path, read Davit's case study.
#DataScience #DeepLearning
https://realworlddatascience.net/case-studies/posts/2023/06/15/road-to-reproducible-research.html
#reproducibleresearch #datascience #deeplearning
The road to #reproducibility can be a tricky one to navigate, as Davit Svanidze discovered when he set about making his bachelor’s thesis reproducible. If you are thinking of walking a similar path, start here: https://realworlddatascience.net/case-studies/posts/2023/06/15/road-to-reproducible-research.html
In this case study, Svanidze and colleagues map their journey, beginning to end – signposting hazards to avoid and software, tools, and approaches to help you along the way.
#reproducibility #datascience #deeplearning #reproducibleresearch
How to do good experiments in #reinforcementlearning
#reinforcementlearning #machinelearning #reproducibleresearch #bestpractice
New resource for statisticians interested in reproducible research! https://heidiseibold.ck.page/posts/big-announcement-course-on-reproducible-research-and-change-management #ReproducibleResearch from @HeidiSeibold
Big announcement: New course on #reproducibleresearch and #changemanagement 🧑💻
A joint project with Dr. Alexander Schacht.
#reproducibleresearch #changemanagement
Markus Konkol demonstrates a use case from the @MinkeProject on how the cooperation between the metrology and the oceanographic community can lead to an improved data reliability. #EGU23 #marineobservation #reproducibleresearch #citizenscience
#egu23 #marineobservation #reproducibleresearch #citizenscience
I'm very happy to announce that the @sortee paper I've been working on is finally published!
Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution
https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.14108
#ecology #evolution #github #reproducibleResearch #reproducibility #collaboration
#ecology #evolution #github #reproducibleresearch #reproducibility #collaboration
There is one more day of #CodeRefinery tomorrow! This is one of the best days, and as usual anyone can drop by and watch the #livestream:
- at 9:00 CET, #SoftwareTesting which connects many things we have done before.
- And at ~11:00, "Modular code development type-along", where you'll see real steps you can take starting with #Jupyter data analysis turning into a #ReproducibleResearch tool using everything we have learned.
https://coderefinery.github.io/2023-03-21-workshop/ #RSEng #RSE #OpenScience #SciComp
#Coderefinery #livestream #softwaretesting #jupyter #reproducibleresearch #rseng #rse #openscience #scicomp
#CodeRefinery is live for week 2. Last week we talked about version control (#git) a lot, now we show got git can be used to make #ReproducibleResearch, #documentation, #testing, and other things you need for #OpenScience. Yes, you can join for week 2 if you weren't here for week 1:
Livestream starting in 5 minutes:
https://twitch.tv/coderefinery
https://coderefinery.github.io/2023-03-21-workshop/
#Coderefinery #git #reproducibleresearch #documentation #testing #openscience
A new blog post is up! "How Much Do We (Plant Pathologists) Value Openness and Transparency?", @edelponte and @adamhsparks discuss their latest paper with @zacharyfoster et al. and what the implications are for plant pathology, why it may be so closed, and how we can be more open and reproducible in our research. #ReproducibleResearch #FAIRData #OpenResearch #OpenAccess
#openaccess #openresearch #fairdata #reproducibleresearch
Everyone in Bergen and interested in reproducibility and/or R are welcome tomorrow: https://www.meetup.com/rladies-bergen/events/291632166/ - we have reserved 2 hours, but you can come and go whenever you want! Bring your ideas for next R-Ladies meetings or even your newest R-problem. All genders welcome!
#rstats #rladies #meetup #reproducibleresearch #womenintech
Why don't we (scientists) share our data? In our recent paper, https://doi.org/10.1094/PHYTO-10-21-0430-PER, we found that plant pathologists don't commonly share data or code. Gomes et al. examine the reasons and what we can to do encourage this practice in their paper,
https://doi.org/10.1098/rspb.2022.1113. #OpenScience #ReproducibleResearch
#reproducibleresearch #openscience
It's #CodeRefinery time! CodeRefinery is one our main #training courses for #scientists, covering all the skills such as #VersionControl (#git), #documentation, #ReproducibleResearch, #testing, and more
Free to attend to anyone in the world: 21-23 & 28-30 March, EU mornings: https://coderefinery.github.io/2023-03-21-workshop/
We recommend everyone attend this course at least once.
#RSEng #HPC #SciComp #Research #AcademicMastodon #phdstudents #ResearchSoftware #OpenScience
#Coderefinery #training #scientists #versioncontrol #git #documentation #reproducibleresearch #testing #rseng #hpc #scicomp #research #academicmastodon #PhDstudents #researchsoftware #openscience