Elendol · @Elendol
162 followers · 1445 posts · Server hachyderm.ioOne thing I want to try is to store ms data in a database. It would be neat to have a schema/protocol based on MsBackendSql (https://rformassspectrometry.github.io/MsBackendSql/articles/MsBackendSql.htm) to use it from different programming languages.
#bioinformatics #teammassspec #rstats #rformassspectrometry
Johannes Rainer · @jorainer
260 followers · 254 posts · Server fosstodon.org@lgatto @translational_proteomics
You could use #xcms in combination with all other #RforMassSpectrometry package. Maybe more info here: https://jorainer.github.io/xcmsTutorials/
Johannes Rainer · @jorainer
248 followers · 245 posts · Server fosstodon.orgInterested in the @bioconductor #rstats :rstats: package ecosystem for #metabolomics data analysis from #RforMassSpectrometry ?
Check our poster #1002 (Mo + Tue) at #MetSoc2023
#OpenSoftwareDevelopment rules! 15 contributors from 13 institutions.
Also available on Zenodo:
https://doi.org/10.5281/zenodo.7936786
#rstats #metabolomics #rformassspectrometry #metsoc2023 #opensoftwaredevelopment
Johannes Rainer · @jorainer
246 followers · 242 posts · Server fosstodon.org
Lecture on proteomics by @lgatto at #csama 2023 including an overview on the :rstats: package ecosystem from #RforMassSpectrometry #MassSpec
#csama #rformassspectrometry #massspec
Johannes Rainer · @jorainer
242 followers · 220 posts · Server fosstodon.orgOur #MsBackendSql :rstats: package is part of @bioconductor release 3.17 🎉
Allows our #Spectra package to store/read #MassSpec data to/from #SQL databases. #RforMassSpectrometry
#msbackendsql #spectra #massspec #sql #rformassspectrometry
Johannes Rainer · @jorainer
155 followers · 85 posts · Server fosstodon.org@lgatto @toschber excellent idea - could go into #Chromatograms or #xcms (maybe along with the peak detection method?).
As Laurent said, we at #RforMassSpectrometry are always open for contributions from the community
#chromatograms #xcms #rformassspectrometry