Regenerative Research Fdn/NSCI · @NeuralStemCells
7 followers · 63 posts · Server mstdn.science
Thanks to Dr. Yang Bai, @10xGenomics and @illumina for organizing a fun & informative #singlecell symposium @rpi yesterday, including talks by 3 excellent #WomenInSTEM: SUNY's Melinda Larsen, RPI's Elizabeth Blaber, and our own Taylor Bertucci.
#scRNAseq #scATACseq
@RPIcbis
#singlecell #womeninSTEM #scrnaseq #scatacseq
Brendan Innes · @InnesBT
53 followers · 44 posts · Server genomic.socialAnyone know a good review paper / learning resource for building gene regulatory networks #GRN from #scATACseq #ATACseq and/or #scRNAseq data?
Thanks!
#GRN #scatacseq #atacseq #scrnaseq
Brendan Innes · @InnesBT
47 followers · 34 posts · Server genomic.socialCellOracle builds context-specific #GeneRegulatoryNetworks from combined #scRNAseq #scATACseq data.
Tweetorial from @morris_lab@twitter.com here:
https://twitter.com/morris_lab/status/1623354686630764552?t=EnoMEjFSG-dnY5J_i-NMAg&s=19
#generegulatorynetworks #scrnaseq #scatacseq
Haojia Wu · @haojiawu
149 followers · 47 posts · Server mastodon.haojia-wu.com
A new multiomics study from Satija Rahul's lab identified a unique population of CD8+ T cells after COVID-19 vaccination. These cells are the SARS-CoV-2 antigen specific and capable of rapid clonal expansion. The relative frequency and differentiation of these cells can predict clinical outcomes for COVID-19 patients. #covid #multiomics #scRNAseq #scATACseq #CITEseq #ASAPseq #TCR
https://www.biorxiv.org/content/10.1101/2023.01.24.525203v1
#covid #multiomics #scrnaseq #scatacseq #citeseq #asapseq #tcr
Haojia Wu · @haojiawu
24 followers · 8 posts · Server mastodon.haojia-wu.com
scFates: a python package for pseudotime analysis from single cell data #scRNAseq #scATACseq #bioinformatics #python
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac746/6832042
#scrnaseq #scatacseq #bioinformatics #python
Haojia Wu · @haojiawu
16 followers · 7 posts · Server mastodon.jiaworkspace.com
SComatic: a new #singlecell tool to detect somatic mutation from #scRNAseq #scATACseq data
https://www.biorxiv.org/content/10.1101/2022.11.22.517567v1
#singlecell #scrnaseq #scatacseq
Haojia Wu · @haojiawu
9 followers · 3 posts · Server mastodon.jiaworkspace.comSingle cell best practices from Theis lab, a free online book that guides you through every detail of the single cell analysis. #scRNAseq #scATACseq
https://www.sc-best-practices.org/preamble.html
Haojia Wu · @haojiawu
7 followers · 3 posts · Server mastodon.jiaworkspace.comscFates: a python package for pseudotime analysis from single cell data #scRNAseq #scATACseq #bioinformatics #python
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac746/6832042
#scrnaseq #scatacseq #bioinformatics #python