Marc Robinson-Rechavi · @marcrr
1029 followers · 2013 posts · Server ecoevo.socialMarius Lange #BC2basel: increasing complexity of #SingleCell data leads to problems of temporal, spatial and spatio-temporal mapping. The solution proposed is optimal transport applications, implemented in Moscot:
https://moscot.readthedocs.io/en/latest/
https://www.biorxiv.org/content/10.1101/2023.05.11.540374v2 #SpatialTranscriptomics #scRNAseq
#bc2basel #singlecell #spatialtranscriptomics #scrnaseq
Marc Robinson-Rechavi · @marcrr
1029 followers · 2011 posts · Server ecoevo.social
Excellent conclusions of Jean Fan #BC2basel on #machinelearning applied to #scRNAseq #SpatialTranscriptomics
#bc2basel #machinelearning #scrnaseq #spatialtranscriptomics
Marc Robinson-Rechavi · @marcrr
1029 followers · 2011 posts · Server ecoevo.social
Impressive work by Jean Fan's lab #BC2basel: aligning different spatial transcriptomics results, not only from different experiments but different protocols, e.g. MERFISH - Visium. Combining with #scRNAseq clustering and her lab's spot deconvolution allows to compare directly gene expression between these different experiments, https://www.biorxiv.org/content/10.1101/2023.04.11.534630v2.abstract #SpatialTranscriptomics
#bc2basel #scrnaseq #spatialtranscriptomics
Alessia Visconti · @alesssia
208 followers · 294 posts · Server mas.toThere is Minecraft. And then there is the #Visium manual fiducial alignment
#bioinformatics #spatialtranscriptomics #visium
C. Harris Floudas · @chfloudas
96 followers · 1005 posts · Server mstdn.social
Excited for participating in this #spatialtranscriptomics #Visium platform study with an expert team from @NICHD_NIH, in the first step of studying the spatial biology of #pituitary corticotroph tumors, revealing their heterogeneity.
https://www.medrxiv.org/content/10.1101/2023.08.04.23293576v1
#pituitary #visium #spatialtranscriptomics
Daniel Caron · @carondanielp
42 followers · 43 posts · Server genomic.social@haojiawu
Really cool! Such an exciting time in the world of #spatialtranscriptomics
Patrick Martin · @pcnmartin
45 followers · 3 posts · Server sigmoid.socialI might as well have make a pinned post.
We published Vesalius a tool that uses Image analysis methods to analyze spatial-omics data.
A new version will be coming soon that will include multimodal analysis and alignment!
GitHub: https://patrickcnmartin.github.io/Vesalius/
MSB: https://www.embopress.org/doi/full/10.15252/msb.202211080
#spatialtranscriptomics #ImageAnalysis
jobRxiv · @jobRxiv
898 followers · 2589 posts · Server mas.toComputational Scientist
Icahn School of Medicine at Mount Sinai
Come join our team as a #computationalScientist: #multiOmics modeling of #myeloma, including #singleCell, #spatialTranscriptomics and #flowCytometry
See the full job description on jobRxiv: https://jobrxiv.org/job/icahn-school-of-medicine-at-mount-sinai-27778-computational-scientist-5/?feed_id=47998
#ScienceJobs #hi...
https://jobrxiv.org/job/icahn-school-of-medicine-at-mount-sinai-27778-computational-scientist-5/?feed_id=47998
#hi #ScienceJobs #flowcytometry #spatialtranscriptomics #singlecell #myeloma #multiomics #computationalscientist
jobRxiv · @jobRxiv
896 followers · 2574 posts · Server mas.toPostdoctoral Researcher
Icahn School of Medicine at Mount Sinai
Come join our team as a #bioinformatics postdoc: #multiOmics modeling of #myeloma, including #singleCell, #spatialTranscriptomics and #flowCytometry
See the full job description on jobRxiv: https://jobrxiv.org/job/icahn-school-of-medicine-at-mount-sinai-27778-postdoctoral-researcher-4/?feed_id=47893
#ScienceJobs #hi...
https://jobrxiv.org/job/icahn-school-of-medicine-at-mount-sinai-27778-postdoctoral-researcher-4/?feed_id=47893
#hi #ScienceJobs #flowcytometry #spatialtranscriptomics #singlecell #myeloma #multiomics #bioinformatics
Poetry News · @haikubot
740 followers · 7581 posts · Server mastodon.cloudO Psoriasis, a troubling foe,
We seek to know what causes your woes.
Your lesions so hard to manage
What makes them range?
Our search will make your secrets known.
#psoriasis #genetics #spatialtranscriptomics #research #ode #poetry
#psoriasis #genetics #spatialtranscriptomics #research #ode #poetry
jobRxiv · @jobRxiv
877 followers · 2293 posts · Server mas.toComputational Scientist
Icahn School of Medicine at Mount Sinai
Come join our team as a #computationalScientist: #multiOmics modeling of #myeloma, including #singleCell, #spatialTranscriptomics and #flowCytometry
See the full job description on jobRxiv: https://jobrxiv.org/job/icahn-school-of-medicine-at-mount-sinai-27778-computational-scientist-5/?feed_id=45913
#ScienceJobs #hi...
https://jobrxiv.org/job/icahn-school-of-medicine-at-mount-sinai-27778-computational-scientist-5/?feed_id=45913
#hi #ScienceJobs #flowcytometry #spatialtranscriptomics #singlecell #myeloma #multiomics #computationalscientist
ellawilliam · @ellawilliam
0 followers · 2 posts · Server mastodon.nl
Viral Clearance and Viral Test · @jameshebrew
0 followers · 24 posts · Server pawoo.net
To view more details on this report, click on the link:
https://www.rootsanalysis.com/reports/spatial-genomics-market.html
#SpatialGenomics #SpatialGenomicsMarket #SpatialGenomicsMarketSize #SpatialGenomicsTrends #spatialtranscriptomics
#spatialtranscriptomics #SpatialGenomicsTrends #SpatialGenomicsMarketSize #SpatialGenomicsMarket #SpatialGenomics
Haojia Wu · @haojiawu
155 followers · 60 posts · Server mastodon.haojia-wu.com
Alignment of spatial transcriptomics data from different platforms by Jean Fan group
https://www.biorxiv.org/content/10.1101/2023.04.11.534630v1
#spatialtranscriptomics #xenium #visium #bioinformatics
#spatialtranscriptomics #xenium #visium #bioinformatics
Haojia Wu · @haojiawu
155 followers · 59 posts · Server mastodon.haojia-wu.comUse visium to predict missing genes in xenium #spatialtranscriptomics #geneimputation #bioinformatics #xenium #visium
https://www.biorxiv.org/content/10.1101/2023.02.07.527488v1
#spatialtranscriptomics #geneimputation #bioinformatics #xenium #visium
Gene Ontology · @go
201 followers · 187 posts · Server genomic.social
RT @ramialison_lab
Calling all #bioinformatics enthusiasts! Check out our website at https://ramialison-lab.github.io for cutting-edge tools like VR-Omics, VR-Cardiomics, MonaGo, and more! #spatialtranscriptomics #geneontology #cardiac #DataVisualization #3D
#bioinformatics #spatialtranscriptomics #GeneOntology #cardiac #datavisualization #3d
Kurianlab · @kurianlab
80 followers · 509 posts · Server sciencemastodon.com
RT @vizgen_inc
🇫🇷We're excited to sponor Applications of Single Cell Genomics Across Development & Immune Diseases at @NantesUniv! Join us April 4th at 15:30 GMT+1 to discover #MERSCOPE & #MERFISH for high-quality #SpatialTranscriptomics.
Check out more Vizgen events: https://hubs.ly/Q01J6K2S0
#merscope #merfish #spatialtranscriptomics
Yvon Jaillais · @YvonJaillais
76 followers · 65 posts · Server tooting.ch
RT @TheEnriquezLab
"Get ready for the 'beast' from @abberrior, coming soon to @ENSdeLyon for #spatialtranscriptomics!"#microscopy
#microscopy #spatialtranscriptomics
BioImagingUK · @BioImagingUK
41 followers · 170 posts · Server mstdn.scienceRT @BioimagingNA
Two more great speakers this week! 📢
🔬Sci Speaker, March 14 - @Delissa76 from @AllenInstitute for Brain Science on #SpatialTranscriptomics
💼Careers Speaker, March 15 - Sam Tesfai from @Thorlabs will talk about his career path!
Register to join us:
https://www.bioimagingnorthamerica.org/activities/ https://twitter.com/BioimagingNA/status/1625191252273598472
Sebastian Bruchmann · @Doktor_Basti
63 followers · 33 posts · Server mstdn.scienceRT @mariaduco
We are looking for an enthusiastic Postdoc to join my lab
@SCICambridge
to investigate how #whipworms manipulate host intestinal stem cell niche remodelling using #organoids, #singlecell and #SpatialTranscriptomics and state-of-the-art #microscopy:
https://www.jobs.cam.ac.uk/job/38735/
#whipworms #organoids #singlecell #spatialtranscriptomics #microscopy