Marc Robinson-Rechavi · @marcrr
1029 followers · 2013 posts · Server ecoevo.social

Marius Lange : increasing complexity of data leads to problems of temporal, spatial and spatio-temporal mapping. The solution proposed is optimal transport applications, implemented in Moscot:
moscot.readthedocs.io/en/lates
biorxiv.org/content/10.1101/20

#bc2basel #singlecell #spatialtranscriptomics #scrnaseq

Last updated 1 year ago

Marc Robinson-Rechavi · @marcrr
1029 followers · 2011 posts · Server ecoevo.social
Marc Robinson-Rechavi · @marcrr
1029 followers · 2011 posts · Server ecoevo.social

Impressive work by Jean Fan's lab : aligning different spatial transcriptomics results, not only from different experiments but different protocols, e.g. MERFISH - Visium. Combining with clustering and her lab's spot deconvolution allows to compare directly gene expression between these different experiments, biorxiv.org/content/10.1101/20

#bc2basel #scrnaseq #spatialtranscriptomics

Last updated 1 year ago

Alessia Visconti · @alesssia
208 followers · 294 posts · Server mas.to

There is Minecraft. And then there is the manual fiducial alignment

#bioinformatics #spatialtranscriptomics #visium

Last updated 1 year ago

C. Harris Floudas · @chfloudas
96 followers · 1005 posts · Server mstdn.social

Excited for participating in this platform study with an expert team from @NICHD_NIH, in the first step of studying the spatial biology of corticotroph tumors, revealing their heterogeneity.

medrxiv.org/content/10.1101/20

#pituitary #visium #spatialtranscriptomics

Last updated 1 year ago

Daniel Caron · @carondanielp
42 followers · 43 posts · Server genomic.social

@haojiawu
Really cool! Such an exciting time in the world of

#spatialtranscriptomics

Last updated 1 year ago

Patrick Martin · @pcnmartin
45 followers · 3 posts · Server sigmoid.social

I might as well have make a pinned post.

We published Vesalius a tool that uses Image analysis methods to analyze spatial-omics data.

A new version will be coming soon that will include multimodal analysis and alignment!

GitHub: patrickcnmartin.github.io/Vesa

MSB: embopress.org/doi/full/10.1525

#spatialtranscriptomics #ImageAnalysis

Last updated 1 year ago

jobRxiv · @jobRxiv
898 followers · 2589 posts · Server mas.to
jobRxiv · @jobRxiv
896 followers · 2574 posts · Server mas.to
Poetry News · @haikubot
740 followers · 7581 posts · Server mastodon.cloud

O Psoriasis, a troubling foe,
We seek to know what causes your woes.
Your lesions so hard to manage
What makes them range?
Our search will make your secrets known.

medicalnewstoday.com/articles/

#psoriasis #genetics #spatialtranscriptomics #research #ode #poetry

Last updated 1 year ago

jobRxiv · @jobRxiv
877 followers · 2293 posts · Server mas.to
ellawilliam · @ellawilliam
0 followers · 2 posts · Server mastodon.nl
Haojia Wu · @haojiawu
155 followers · 60 posts · Server mastodon.haojia-wu.com

Alignment of spatial transcriptomics data from different platforms by Jean Fan group
biorxiv.org/content/10.1101/20

#spatialtranscriptomics #xenium #visium #bioinformatics

Last updated 2 years ago

Haojia Wu · @haojiawu
155 followers · 59 posts · Server mastodon.haojia-wu.com
Gene Ontology · @go
201 followers · 187 posts · Server genomic.social

RT @ramialison_lab
Calling all enthusiasts! Check out our website at ramialison-lab.github.io for cutting-edge tools like VR-Omics, VR-Cardiomics, MonaGo, and more!

#bioinformatics #spatialtranscriptomics #GeneOntology #cardiac #datavisualization #3d

Last updated 2 years ago

Kurianlab · @kurianlab
80 followers · 509 posts · Server sciencemastodon.com

RT @vizgen_inc
🇫🇷We're excited to sponor Applications of Single Cell Genomics Across Development & Immune Diseases at @NantesUniv! Join us April 4th at 15:30 GMT+1 to discover & for high-quality .

Check out more Vizgen events: hubs.ly/Q01J6K2S0

#merscope #merfish #spatialtranscriptomics

Last updated 2 years ago

Yvon Jaillais · @YvonJaillais
76 followers · 65 posts · Server tooting.ch

RT @TheEnriquezLab
"Get ready for the 'beast' from @abberrior, coming soon to @ENSdeLyon for !"

#microscopy #spatialtranscriptomics

Last updated 2 years ago

BioImagingUK · @BioImagingUK
41 followers · 170 posts · Server mstdn.science

RT @BioimagingNA
Two more great speakers this week! 📢

🔬Sci Speaker, March 14 - @Delissa76 from @AllenInstitute for Brain Science on

💼Careers Speaker, March 15 - Sam Tesfai from @Thorlabs will talk about his career path!

Register to join us:
bioimagingnorthamerica.org/act twitter.com/BioimagingNA/statu

#spatialtranscriptomics

Last updated 2 years ago

Sebastian Bruchmann · @Doktor_Basti
63 followers · 33 posts · Server mstdn.science

RT @mariaduco
We are looking for an enthusiastic Postdoc to join my lab
@SCICambridge
to investigate how manipulate host intestinal stem cell niche remodelling using , and and state-of-the-art :
jobs.cam.ac.uk/job/38735/

#whipworms #organoids #singlecell #spatialtranscriptomics #microscopy

Last updated 2 years ago