Pierre Lindenbaum · @yokofakun
961 followers · 1393 posts · Server genomic.social
The PR for samtools (visualize CNVs in the #terminal ) was merged today ! #samtools #cnv #sv #structuralvariant #ascii https://github.com/samtools/samtools/pull/1910
#terminal #samtools #cnv #SV #structuralvariant #ascii
Pierre Lindenbaum · @yokofakun
929 followers · 1210 posts · Server genomic.socialThe future release of #delly2 will contain a 'Pan-genome based SV caller' https://github.com/dellytools/delly/commit/00bdb661f6524623a4da275c0beb4331d8f7d4a3#diff-7e4c9a6f514d8ac9f231bdc1ce58ddae1fa9bdbfb05f7055fc401d71d2039ee0R46 #sv #structuralvariant #pangenome #bioinformatics
#delly2 #SV #structuralvariant #pangenome #bioinformatics
Pierre Lindenbaum · @yokofakun
898 followers · 1023 posts · Server genomic.socialhttps://github.com/PopicLab/cue Cue: a deep learning framework for SV calling and genotyping #structuralVariant #sv
Pierre Lindenbaum · @yokofakun
859 followers · 870 posts · Server genomic.social
"Structural variation across 138,134 samples in the TOPMed consortium"
#cnv #genomics #structuralvariant #genetics
Pierre Lindenbaum · @yokofakun
823 followers · 737 posts · Server genomic.social
#cnv #structuralVariant #genomics #bioinformatics A large DUP (~1Mb) quickly found using https://github.com/brentp/goleft and confirmed by looking at the BAM files.
#cnv #structuralvariant #genomics #bioinformatics
Pierre Lindenbaum · @yokofakun
823 followers · 737 posts · Server genomic.social#cnv #structuralVariant #genomics #bioinformatics A large DUP (~1Mb) quickly found using https://github.com/brentp/goleft and confirmed by looking at the BAM files.
#cnv #structuralvariant #genomics #bioinformatics
Pierre Lindenbaum · @yokofakun
822 followers · 721 posts · Server genomic.socialwhat is the use of the "Pan-Genome k-mer set" in etching ? http://big.hanyang.ac.kr/ETCHING/document.html #SV #genomics #structuralVariant #genetics
#SV #genomics #structuralvariant #genetics
Pierre Lindenbaum · @yokofakun
578 followers · 339 posts · Server genomic.social
Inversion of the day .
#IGV #inversion #SV #structuralVariant
#igv #inversion #SV #structuralvariant
Pierre Lindenbaum · @yokofakun
538 followers · 272 posts · Server genomic.social
"It's sunday #CNV !" 🍾
#genomics #bioinformatics #structuralVariant #sv #cnv
(made with https://lindenb.github.io/jvarkit/SwingBamCov.html )
#cnv #genomics #bioinformatics #structuralvariant #SV