Vivek Mutalik · @vivek_mutalik
677 followers · 949 posts · Server fediscience.org

A self‐propagating, barcoded transposon system for the dynamic rewiring of genomic networks | Molecular Systems Biology

embopress.org/doi/full/10.1525

#tnseq

Last updated 1 year ago

Vivek Mutalik · @vivek_mutalik
638 followers · 701 posts · Server fediscience.org

-wide screen in human plasma identifies multifaceted complement evasion of aeruginosa | PLOS

journals.plos.org/plospathogen

#tnseq #pathogens #Pseudomonas #genome

Last updated 2 years ago

Vivek Mutalik · @vivek_mutalik
630 followers · 635 posts · Server fediscience.org

Quantifying the local landscape of a nascent bacterial community


nature.com/articles/s41467-022

#evolutionarypaths #tnseq #adaptive

Last updated 2 years ago

Vivek Mutalik · @vivek_mutalik
592 followers · 508 posts · Server fediscience.org

Revealing Causes for False-Positive and False-Negative Calling of Gene in Escherichia coli Using Insertion Sequencing

journals.asm.org/doi/10.1128/m

#FunctionalGenomics #tnseq #Transposon #essentiality

Last updated 2 years ago

Vivek Mutalik · @vivek_mutalik
468 followers · 346 posts · Server fediscience.org

Construction of high-density mutant library of Staphylococcus aureus using ϕ11 -

pubmed.ncbi.nlm.nih.gov/364228

#tnseq #bacteriophage #Transposon

Last updated 2 years ago

So, I'm checking whether a transposon from a TB library for Tn-Seq experiments is actually present in the sequenced genome. Can I just try to align the transposon sequence to the contigs to see if its present? PCR failed to find the transposon in the isolate, so I should expect that the transposon sequence won't align to the contigs of the genome?

#tnseq #tuberculosis #microbiology #bioinformatics

Last updated 2 years ago