CellBioNews · @cellbionews
113 followers · 1845 posts · Server scientificnetwork.deResearchers identify #protein that helps tell #plants 'no' when #nitrogen is low.
#endocrine #signalling #semiochemistry #STOP1 #TCP20 #transcriptome
#protein #plants #nitrogen #endocrine #signalling #semiochemistry #stop1 #tcp20 #transcriptome
Stephen Matheson🌵🌲 · @sfmatheson
709 followers · 685 posts · Server fediscience.orgLoic Binan of the Broad:
All-optical genetic screens of intracellular and intercellular #transcriptional circuits with Perturb-FISH
Various CRISPR-based methods to look (multiplexed) at outcomes after knockdown to explore gene expression circuits, those are great, but want richer data (morphology etc)
one guide per cell (knock down one gene per cell) see #transcriptome via MERFISH, then identify the perturbed gene via in situ T7 transcription (same chemistry as MERFISH)
1/2
#cssinglecells23 #transcriptome #transcriptional
Haojia Wu · @haojiawu
165 followers · 69 posts · Server mastodon.haojia-wu.com
GAGE-seq for 3D genome and transcriptome co-profiling within the same single cell
https://www.biorxiv.org/content/10.1101/2023.07.20.549578v1
#singlecell #transcriptome #Genomics
#singlecell #transcriptome #genomics
CellBioNews · @cellbionews
72 followers · 1578 posts · Server scientificnetwork.deStudy reveals how a tall #spruce develops defense against hungry #weevils.
#genomics #stone_cells #transcriptome #Pissodes #Picea #evolution
https://phys.org/news/2023-07-reveals-tall-spruce-defense-hungry.html
#spruce #weevils #genomics #stone_cells #transcriptome #pissodes #picea #evolution
CellBioNews · @cellbionews
58 followers · 1423 posts · Server scientificnetwork.deArtificially modulating #stomatal development may improve #crop #stress tolerance.
#transcriptome #regulation #guardcells #VIGS
https://phys.org/news/2023-06-artificially-modulating-stomatal-crop-stress.html
#stomatal #crop #stress #transcriptome #regulation #guardcells #vigs
CellBioNews · @cellbionews
54 followers · 1319 posts · Server scientificnetwork.deResearchers discover #Chinmo, 'the youth #gene'
#chinmo #gene #br_c #e93 #maturation #regulation #transcriptome
spiewak2011 · @spiewak2011
0 followers · 42 posts · Server mstdn.social
Predicting Which Bladder Cancer Patients Will Respond to Immunotherapy #urology #bioinformatics #transcriptome
#transcriptome #bioinformatics #urology
spiewak2011 · @spiewak2011
0 followers · 37 posts · Server mstdn.socialAssociation of 18-Gene expression profile (GEP) with clinical outcomes in patients with metastatic triple-negative breast cancer (mTNBC) treated with pembrolizumab (Pembro) or chemotherapy (Chemo) in KEYNOTE-119 #GeneExpressionProfiling #transcriptome
https://www.esmoopen.com/article/S2059-7029(23)00605-1/fulltext
#transcriptome #geneexpressionprofiling
CellBioNews · @cellbionews
54 followers · 1252 posts · Server scientificnetwork.deTiming is everything: New insights into #floral #development unveil nature's perfect clock.
#transcriptome #regulation #meristem #AGAMOUS
https://phys.org/news/2023-05-insights-floral-unveil-nature-clock.html
#floral #development #transcriptome #regulation #meristem #agamous
CellBioNews · @cellbionews
54 followers · 1239 posts · Server scientificnetwork.deHow a sea #anemone uses its #algal #symbionts to assimilate #nitrogen in nutrient-poor waters.
https://phys.org/news/2023-05-sea-anemone-algal-symbionts-assimilate.html
#anemone #algal #symbionts #nitrogen #RNA #transcriptome
Federico Comitani · @inatimoc
48 followers · 23 posts · Server fediscience.orgShamless plug warning! ⚠️
Our last paper on #transcriptional heterogeneity of #pediatric #cancer is out.
Did you think a quiet #genome translates into a quiet #transcriptome? Think again!
#multiscale #clustering on a pan-cancer #RNASeq cohort revealed new diagnostic subtypes and helped us train a #cnn model to identify tumour components in #clinical #oncology samples.
Read it here, it's #openaccess: https://www.nature.com/articles/s41591-023-02221-x
#ml #machinelearning #Transcriptomics #precisionmedicine #openaccess #oncology #clinical #cnn #rnaseq #clustering #multiscale #transcriptome #genome #cancer #pediatric #transcriptional
CellBioNews · @cellbionews
36 followers · 803 posts · Server scientificnetwork.deNew #computational method to identify location of #cell types in a sample.
#computational #cell #ai #cytospace #RNA #transcriptome
CellBioNews · @cellbionews
36 followers · 787 posts · Server scientificnetwork.deTeam co-maps #proteins and #transcriptome in #human tissues.
https://phys.org/news/2023-03-team-co-maps-proteins-transcriptome-human.html
#proteins #transcriptome #human
PhiloNeuroSci📚👨🏿🔬🧠🧫🔬🧬💻📊📈📉 · @PhiloNeuroScie
540 followers · 359 posts · Server neuromatch.socialRetrospective analysis of #enhancer activity and #transcriptome history
#transcriptomics #epigenomics
https://doi.org/10.1038/s41587-023-01683-1
#enhancer #transcriptome #transcriptomics #epigenomics
MPI für Molekulare Genetik · @MPI_MolGen
165 followers · 40 posts · Server wisskomm.social
📢 Don't miss: Tuuli Lappalainen @tuuliel_lab (@nygenome @KTHuniversity @scilifelab) will speak at our #DahlemColloquium!
📜 Functional variation in the human #genome: lessons from the #transcriptome
📆 27. FEB, 11:00 AM (CET)
📍 @MPI_MolGen, #Berlin
🔗 https://www.molgen.mpg.de/events/33625/3967495
#dahlemcolloquium #genome #transcriptome #berlin
Didier AURELLE · @didier_aurelle
112 followers · 50 posts · Server ecoevo.socialNew article on the #genetic strucutre #Paramuricea #octocorals: with #microsatellites and #transcriptome data we study the Atlantic/Mediterranean divergence, and a cryptic lineage in the Atlantic. More information here: https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.9740
#genetic #paramuricea #octocorals #microsatellites #transcriptome
CellBioNews · @cellbionews
24 followers · 410 posts · Server scientificnetwork.deAvian #flu could decimate Australian black #swans.
#genomics #epizootic #HPAI #transcriptome
https://phys.org/news/2023-01-avian-flu-decimate-australian-black.html
#flu #swans #genomics #epizootic #hpai #transcriptome
CellBioNews · @cellbionews
21 followers · 370 posts · Server scientificnetwork.deNew study decodes one of the world's fastest #cell #movements.
#Heliozoan #axopodia #Raphidocystis #tubulin #transcriptome
https://phys.org/news/2023-01-decodes-world-fastest-cell-movements.html
#cell #movements #heliozoan #axopodia #raphidocystis #tubulin #transcriptome
darachm · @darachm
139 followers · 276 posts · Server genomic.social
Oh now this is fun
Nielsen etc did absolute-calibrated #proteome #transcriptome and #metabalome on yeast in chemostats (C-limited), so another dope data set for the #PieChart Theory of #MicrobialGrowth
Also estimating the % occupancy of individual #enzyme , that 35 or so are >90% used up for throughput, so maybe limiting metabolic chokepoints
Oh and tldr #amino-acids are super limiting so #aminoacidMetabolismRules
#proteome #transcriptome #metabalome #piechart #microbialgrowth #enzyme #amino #aminoacidmetabolismrules
Chuixiang (Tree) Yi · @TreeYi
10 followers · 1757 posts · Server mastodon.world
RT @AbioticStress
Article by @HimabinduKudapa @RutwikBarmukh @GargVanika @Anuchitikineni @rajvarshney @IJMS_MDPI
Comprehensive #Transcriptome Profiling Uncovers Molecular Mechanisms & Potential Candidate #Genes Associated with #HeatStress Response in #Chickpea
#transcriptome #genes #HeatStress #chickpea #plantsci