Now Golnaz Vahedi from UPenn
https://vahedilab.com/
speaking on
"Modeling Type 1 #Diabetes progression from single-cell #transcriptomic measurements in #human #islets

Vision is to do #SingleCell profiling of #pancreatic cells and peripheral blood, simultaneously, to identify patients who can benefit from early interventions

https://www.nature.com/articles/s42255-022-00531-x

#CSSingleCells23

🔓⬇️#OpenAccess #PlantScience for your weekend!
#Genomic, #transcriptomic, and #metabolomic analysis of Oldenlandia corymbosa reveals the #biosynthesis and mode of action of anti-#cancer metabolites.
https://doi.org/10.1111/jipb.13469
@wileyplantsci
#JIPB #PlantSci #medicine #PlantScience

#Cochlea #cell atlas built from single-cell sequencing discovers new cell types, uncovers hidden molecular features.

#genomics #transcriptomic #Emilin2 #mRNA

https://phys.org/news/2023-06-cochlea-cell-atlas-built-single-cell.html

And this simulation #rstats code, shows why one must use use very short seeds when using #blast to map #nanopore #transcriptomic #RNAseq data (Q10 quality scores are not unheard of, in such datasets).

Take home message, one has got to work for their database searches for long read platforms
(R code in the alt description)

New method developed to infer #gene #regulatory networks from single-#cell #transcriptomic data.

https://phys.org/news/2023-04-method-infer-gene-regulatory-networks.html

Alright, #bioinformatics folk, which multiple sequence #alignment and #clustering packages should I add to my #transcriptomic @nanopore workflow?
Linclust, uclust/ cd-hit are candidates for clustering.
Candidates for MSA: clustal/kalign/hmmalign.
Other suggestions? #nanopore #sequencing

Don't miss this great #OpenAccess #review in @Non_Coding_RNA about #MicroRNA resources- it has a wonderful section about the contributions and use of the #GeneOntology for examining #transcriptomic data: DOI: 10.3390/ncrna9020018
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RT @UCLgene
Fantastic to see my previous student, Diana Luna Buitrago, writing this great review of microRNA analysis tools: Insights into Online microRNA Bioinformatics Tools https://www.mdpi.com/2311-553X/9/…
https://twitter.com/UCLgene/status/1632682509069680641

#Cancerbiology #oncologyresearch @naturemedicine Clinical, genomic and #transcriptomic analyses of paired samples of synchronous bilateral female #breastcancer identify associations between tumor concordance and #immune infiltrates levels and response to neoadjuvant treatment @FabienReyal @JoshWaterfall
📌 https://www.nature.com/articles/s41591-023-02216-8
📌 https://www.nature.com/nm/

RT @Kelvyinzinho
Delighted to share our latest collab project led by ⁦@johwirth⁩ with ⁦@Meier_Lab⁩. 🤩 #spatial #transcriptomic #DBiTseq
Check it out👇🏼
Spatial transcriptomics using multiplexed deterministic barcoding in tissue | Nature Communications https://www.nature.com/articles/s41467-023-37111-w

RT @rmwaterhouse
12 #PhD positions in the LongTREC #European #MarieCurie Network - a programme that will develop methods and tools for the analysis of #transcriptomic data obtained with the most recent single-molecule, long-reads #sequencing technologies.

https://career.longtrec.eu/#section-jobs

12 #PhD positions in the LongTREC #European #MarieCurie Network - a programme that will develop methods and tools for the analysis of #transcriptomic data obtained with the most recent single-molecule, long-reads #sequencing technologies.

https://career.longtrec.eu/#section-jobs

Absolutely fantastic new paper from Marie Brasseur & @leeselab in @BioMedCentral featuring Gammarus fossarum - a wonderful demonstration of the #geneontology in use (thanks for the citation!) @VascoElbrecht @rksalis @weiss_martina @Daniel_G1978 #goannotation
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RT @leeselab
New study by our @unidue team & @Leibniz_LIB on #multiplestressor impacts lead by Marie Brasseur 🎉. We herein focused on #transcriptomic analysis of the #freshwater k…
https://twitter.com/leeselab/status/1601184358370459648

My first #toot & #introduction on Mastodon after soft-exiting #Twitter:

Hey y'all. I'm a 2nd-year #PhD student at #UGA in the #PlantBiology department 🌱. I got my BS in #Botany at #CPP. I'm currently a #NSFGRFP & UGA Presidential fellow.

I research 🌸 #FlowerColor in Geranium & using 🧬 #Transcriptomic, #Phylogenomic, & #CitizenScience approaches.

I'm also really passionate about #Diversity in #STEM as a 🏳️‍🌈 #Queer & 🇳🇮🇲🇽-🇺🇸 #Latinx student!

I'm hoping to reconnect with my Twitter network here

Glad to see that our new work: "Comparative #transcriptomic provides novel insights into the #soybean response to #Colletotrichum truncatum infection" is finally out in @FrontPlantSci@twitter.com. Great collaboration between @ESALQMidias@twitter.com, @CIALE_USAL@twitter.com and @Unibo@twitter.com
https://www.frontiersin.org/articles/10.3389/fpls.2022.1046418/full

Early view from #MolecularEcology investigating #methylation and #transcriptomic response of #Crassostrea #hongkongensis to #OceanAccidification.

https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.16751

#Aquaculture #Genomics 🧬🦪

#introduction I am a young researcher in #neuroscience. I am currently collaborating with Romuald Nargeot at the University of Bordeaux using the mollusk Aplysia as system to study learning and memory. Our aim is to develop and apply single-cell #transcriptomic and epigenetic analysis in a natural organoid whose neurons have been identified and their involvement in behavior and learning established.

Hello #fediverse, here is my #introduction: I am a #Bioinformatician at Evotec and I am here for the #science 😉

From a #work, main interest is in processing, managing and analyzing large #Transcriptomics and #Genomics data sets to boost #DrugDiscovery. My team focuses on data from our #transcriptomic screening platform #ScreenSeq and #multiomics data within the Molecular Patient Database (E.MPD).

Private interest are in #linux, #programming and lately I started to learn and love #Rust 🥰